Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,442,014 – 3,442,110 |
Length | 96 |
Max. P | 0.689347 |
Location | 3,442,014 – 3,442,110 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -18.33 |
Energy contribution | -18.33 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.99 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3442014 96 + 22407834 AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAACAGCAAAAACCGAAUGAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUUCG ..(((((((((...((((.((((......))))....))))....)))))...........(((....))).............))))........ ( -17.60) >DroSim_CAF1 31132 96 + 1 AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUAAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCGUUUUUCG ..((((....((((((((.((((......)))).)))........................(((....)))....)))))....))))........ ( -18.20) >DroYak_CAF1 33424 95 + 1 AAGCGGAUUCGAGAUUGCGGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUGAAAAAC-CAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUCCG ...((((((((......)))).............(((((..........((......-)).(((....)))............)))))....)))) ( -20.00) >consensus AAGCGGAUUCGAGAUUGCAGAUUAUUAAAAAUCAGCAGCAAAAACCGAAUGAAAAACCCAACACGAAAGUGAUACAUUUCCCAGCUGCAUUUUUCG ..(((((((((...((((.((((......))))....))))....)))))...........(((....))).............))))........ (-18.33 = -18.33 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:18 2006