Locus 1305

Sequence ID 2L_DroMel_CAF1
Location 3,440,530 – 3,440,623
Length 93
Max. P 0.532267
window2140

overview

Window 0

Location 3,440,530 – 3,440,623
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 81.00
Mean single sequence MFE -28.57
Consensus MFE -20.71
Energy contribution -23.15
Covariance contribution 2.44
Combinations/Pair 1.29
Mean z-score -1.51
Structure conservation index 0.72
SVM decision value -0.00
SVM RNA-class probability 0.532267
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3440530 93 - 22407834
GCUUACUUUGGCACUUGCGAUGCUUCGGCCGCACGGGUUUGUCUCAUGCCGAACACGUUUGGCCGGUGCUACACUCGCAGAAAAAUUCAGAAA
(((......)))..((((((.((.(((((((.(((.(((((.(....).))))).))).))))))).)).....))))))............. ( -31.80)
>DroAna_CAF1 34155 89 - 1
ACUUACUUUGGCACUUGAGAUGCUUCGAAUUGGCGGUUUUGGCUCAUGCCAAGCACGUUCGCUGAGUGCUACACUG--AAAAAAAUGCA--AA
........(((((((((((....))))).(..((((.((((((....)))))).....))))..))))))).....--...........--.. ( -22.20)
>DroSim_CAF1 29678 93 - 1
GCUUACUUUGGCACUUGCGAUGCUUCGGCCGCACGGGUUUGGCUCAUGCCGAACACGUUUAGCCGGUGCUACACUCGCAGAAAAAUCCAGAAA
......(((((...((((((.((.(((((...(((.(((((((....))))))).)))...))))).)).....))))))......))))).. ( -33.30)
>DroYak_CAF1 32097 93 - 1
GCUUACUUUGGCACUUGCGAUGCUUCGGGCGCGCGGGUUUGGCUCAUGCCAAACACGUUUAGUCUACAAUACACUCGCAGAAAUAUCUAGAUA
(((......)))..((((((((....((((..(((.(((((((....))))))).)))...))))......)).))))))............. ( -27.00)
>consensus
GCUUACUUUGGCACUUGCGAUGCUUCGGCCGCACGGGUUUGGCUCAUGCCAAACACGUUUAGCCGGUGCUACACUCGCAGAAAAAUCCAGAAA
(((......)))..((((((.((.(((((((.(((.(((((((....))))))).))).))))))).)).....))))))............. (-20.71 = -23.15 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:15 2006