Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,437,865 – 3,437,980 |
Length | 115 |
Max. P | 0.526761 |
Location | 3,437,865 – 3,437,980 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -26.09 |
Consensus MFE | -15.71 |
Energy contribution | -17.52 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.20 |
Mean z-score | -1.79 |
Structure conservation index | 0.60 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3437865 115 + 22407834 CAGAGAAACCUCCGCGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA-AAUGACAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACUCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........)).....-..(((((((.....)))))))...........))))-.......))))..)))).)))) ( -28.03) >DroAna_CAF1 31765 113 + 1 CACAAAUAGCUCCACAGGGCGCGGAAA-AAAACAGUAGCACAGAAAUACGGGAAAAU-AGUUGU-GCAAAAAAAUGUCCGCUUUU-GCCAGCUGUGACUCGGUCUAUUCCCCAAAGG ........((((....))))(.((((.-......(.....)(((....((((...((-(((((.-((((((..........))))-)))))))))..)))).))).)))).)..... ( -25.30) >DroSim_CAF1 26978 115 + 1 CAGAGAAACCUCCACGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA-AAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACGCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........)))....-..(((((((.....)))))))....))).((.((..-...))))))))..)))).)))) ( -28.10) >DroYak_CAF1 29322 116 + 1 CAGAGAAACCACCAAGGGGCUUAGGAAAACAAAAACAGCGCAAUAAUAAAGCGAAAAAAAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG-AACACGGUCUAUUCCCCCGAGG ...........((..((((..((((..........((((((.........))........(((((((.....)))))))...........))))-.......))))...))))..)) ( -22.93) >consensus CAGAGAAACCUCCACGGGGCUUAGAAAAACAAAAACAGCGCAAUAAUAAAGCGAAAA_AAUGGCAAUAAAAAAUUGUCAACUUCUGGCCAGCUG_AACUCGGUCUAUUCCCCAGAGG ........((((...((((..((((..........((((((.........))........(((((((.....)))))))...........))))........))))..)))).)))) (-15.71 = -17.52 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:14 2006