Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,437,287 – 3,437,395 |
Length | 108 |
Max. P | 0.914058 |
Location | 3,437,287 – 3,437,395 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -22.21 |
Consensus MFE | -13.66 |
Energy contribution | -14.62 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.16 |
Mean z-score | -2.25 |
Structure conservation index | 0.62 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3437287 108 + 22407834 ACCUUGCCCAUGCCACCUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroSec_CAF1 26225 108 + 1 ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroAna_CAF1 31226 103 + 1 -------------AGUUUUAAUAUUCAUGGCGCAGUUCCAAAAAAUUCGUG-GAACAUAAAUCAAAAACGACUAUCUCCGU-GCACACAAAAGAAGGCACCCAUAUAUUU--UCCUUUUU -------------..............((((((.((((((.........))-)))).....((......))........))-)).))...(((((((.............--.))))))) ( -14.64) >DroSim_CAF1 26416 108 + 1 ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroYak_CAF1 27927 108 + 1 ACAUUACCCAUGCCACGUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUAUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >consensus ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG____________AUGUAUUUCAACCUUUUU ...............................((((((.....((....))(((((((((..((......)).))))))))).))))))................................ (-13.66 = -14.62 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:13 2006