Locus 130

Sequence ID 2L_DroMel_CAF1
Location 392,697 – 392,790
Length 93
Max. P 0.916909
window201

overview

Window 1

Location 392,697 – 392,790
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.13
Mean single sequence MFE -26.52
Consensus MFE -17.75
Energy contribution -18.41
Covariance contribution 0.67
Combinations/Pair 1.20
Mean z-score -2.05
Structure conservation index 0.67
SVM decision value 1.11
SVM RNA-class probability 0.916909
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 392697 93 - 22407834
GGCAGUGA-----------GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAGCUCCGCUCCCCGGAUCGCCGCCCCGUCUCAUAU
(((((((.-----------...)))))))(((.((((((((....)))))..((((.((((...(((...))).))))....)))).))))))........... ( -29.30)
>DroSec_CAF1 8300 93 - 1
GGCAGUGA-----------GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAGCUCCGCUCCCCGGAUCGCCGCCCCGUCUCAUAU
(((((((.-----------...)))))))(((.((((((((....)))))..((((.((((...(((...))).))))....)))).))))))........... ( -29.30)
>DroSim_CAF1 8260 93 - 1
GGCAGUGA-----------GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAGCCCCGCUCCCCGGAUCGCCGCCCCGUCUCAUAU
(((((((.-----------...)))))))(((.((((((((....)))))........((((((.....(((...))).....)))))).)))..)))...... ( -27.80)
>DroEre_CAF1 15038 92 - 1
GGCAGUGA-----------GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAGCUCCGCUCCCCAGCUCGCC-CCCCGUCUCAUAC
(((((((.-----------...)))))))(((.((((((((....))))........((((...(((...))).))))....)))).)))-............. ( -25.60)
>DroYak_CAF1 8609 75 - 1
GGCAGUGA-----------GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAG-----------------CC-CCCCUUCUCGUAC
(((((((.-----------...)))))))((((((((((((...................))))))).)))-----------------))-............. ( -25.41)
>DroPer_CAF1 29732 93 - 1
---AGUGAUCCCUAAAGCGGAUCAUGGCUAGCUGCCUAAUUAAUUAAUUAUAAUCCCACCGAUUAGCAUAGCUCCCAACUUGGGGUCUC--------CUCGCAU
---.((((((((....).)))))))(((.....)))..............(((((.....)))))((..((..(((.....)))..)).--------...)).. ( -21.70)
>consensus
GGCAGUGA___________GAUCGCUGCCGGCUGGCUAAUUAAUUAAUUAUAAUCCCAGCGAUUAGCAUAGCUCCGCUCCCCGGAUCGCC_CCCCGUCUCAUAU
((((((((.............))))))))((((((((((((...................))))))).)))))............................... (-17.75 = -18.41 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:53 2006