Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 58,982 – 59,074 |
Length | 92 |
Max. P | 0.932874 |
Location | 58,982 – 59,074 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -12.48 |
Energy contribution | -11.85 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.29 |
Mean z-score | -2.17 |
Structure conservation index | 0.60 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 58982 92 - 22407834 AAUAAAGU------CCACCUCUGACU--GGACAUUGCAACC-------AGCCAAAAAUUUAACAUUUUGUAGAAAGCAGUUUUAACUGCAUUUUGCAGUUUAGUCGA ........------.......(((((--((((...((....-------.))................(((((((.(((((....))))).)))))))))))))))). ( -23.20) >DroSec_CAF1 32022 91 - 1 AAUAAAGU------CCACCUCUGACU--GAACAUUGCAACC-------AGCCAAAAAUUUAACAUU-UGUAGAAAGCAGUUUUAACUGCAUCUUGCAGUUUAGUCGA ........------.......(((((--((((..(((((..-------.........(((.((...-.)).))).(((((....)))))...)))))))))))))). ( -20.50) >DroSim_CAF1 34338 91 - 1 AAUAAAGU------CCACCUCUGACU--GAACAUUGCAACC-------AGCCAAAAAUUUAACAUU-UGUAGAAAGCAGUUUUAACUGCAUCUUGCAGUUUAGUCGA ........------.......(((((--((((..(((((..-------.........(((.((...-.)).))).(((((....)))))...)))))))))))))). ( -20.50) >DroEre_CAF1 33452 91 - 1 AAUAAAGU------CCUGCUUUAACU--GAACAUUGCAAUC-------GGCCAAAAAUAUAACAUU-UGUAGAAAGCAGUUUCAACUGCAUUUUGCAGUUUAGCCGA ..(((((.------....)))))...--...........((-------(((.(((..........(-(((((((.(((((....))))).))))))))))).))))) ( -20.90) >DroYak_CAF1 31857 97 - 1 AAUAAAAUCUAAGACCUCCUUUAACU--GAACAUUGCAAUC-------GGCCGAAAAUAUAACAUU-UGUAGAAAGCAGCUUCAACUGCAUUUUGCAGUUUAGCCGA ..........................--...........((-------(((..((..........(-(((((((.((((......)))).))))))))))..))))) ( -18.40) >DroAna_CAF1 38449 92 - 1 AUUUAGAU------CAAAAUUUAGCUGCGAAUAUUGCACUCGGCGCUCGGCCAAGAA---AACGUG-CAUAGAAAGCAGGCUCAACUGCAUUUUGUGGUUCG----- ........------........(((..((((...(((((..(((.....)))..(..---..))))-))......((((......))))..))))..)))..----- ( -22.20) >consensus AAUAAAGU______CCACCUCUAACU__GAACAUUGCAACC_______AGCCAAAAAUUUAACAUU_UGUAGAAAGCAGUUUCAACUGCAUUUUGCAGUUUAGUCGA ............................((((...((............))................(((((((.((((......)))).)))))))))))...... (-12.48 = -11.85 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:14 2006