Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,428,734 – 3,428,850 |
Length | 116 |
Max. P | 0.775582 |
Location | 3,428,734 – 3,428,850 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -19.58 |
Energy contribution | -20.82 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.95 |
Structure conservation index | 0.67 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3428734 116 - 22407834 ACUAUAUUCCUAAUUUAAUAAAAUUUUGUUCAGUGCAUGUGUGCCACCUUGUGAUAAGGCAGCCGCUAAUUCCUCGGCAUGCCCCGCGACAAUAAAAUGGCAACAAUAGGCACACA ..........................(((.....)))((((((((...(((((....((((((((.........)))).)))).)))))........((....))...)))))))) ( -30.30) >DroSec_CAF1 17675 116 - 1 GCUAUAUUCAAAAUUUAAUAGAAUUUUGUUCAGUGCAGGUGUGCCACCUUGUGAUAAGGCAGCCACUAAUUCCUCGGCAUGCCCCGCGACAAUAAAAUGGCAACAAAAGGCACACA ((......((((((((....))))))))......))..(((((((...(((((....(((((((...........))).)))).)))))........((....))...))))))). ( -35.20) >DroSim_CAF1 17785 116 - 1 GCUAUAUUCACAAUUUAAUAGAAUUUUGUUCAGUGCAGGUGUGCCACCUUGUGAUAAGGCAGCCACUAAUUCCUCGGCAUGCCCCGCGACAAUAAAAUGGCAACAAAAGGCACACA ((......((.(((((....))))).))......))..(((((((...(((((....(((((((...........))).)))).)))))........((....))...))))))). ( -31.70) >DroEre_CAF1 18128 114 - 1 GCUGGAUUCCGAAC-UAAUAGAAUUUCGCUCAGUGCAGGUGUGCCACCUUGUGAUAAGGCAGCCACUAAUGCCUCGGCAUGCCCCCCG-CAUUAAAAUGGCAACAAAAGGCACACA .(((.(((.((((.-.........))))...))).)))(((((((.(((((...)))))..((((.((((((...((....))....)-)))))...)))).......))))))). ( -33.80) >DroYak_CAF1 19203 89 - 1 AUUUCAUUC---------------UUU--GCAGUGCAGGUGUGUCAACUUUUGAUAAGGCAGCCACUAAUUCCUCGGCAUGUCCCGCGACAAUAAAAUGCCAACAA---------- .........---------------(((--((...)))))..(((((.....))))).(((((((...........))).((((....))))......)))).....---------- ( -16.00) >consensus GCUAUAUUCA_AAUUUAAUAGAAUUUUGUUCAGUGCAGGUGUGCCACCUUGUGAUAAGGCAGCCACUAAUUCCUCGGCAUGCCCCGCGACAAUAAAAUGGCAACAAAAGGCACACA ......................................(((((((............(((((((...........))).))))..............((....))...))))))). (-19.58 = -20.82 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:03 2006