Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,422,778 – 3,422,874 |
Length | 96 |
Max. P | 0.793376 |
Location | 3,422,778 – 3,422,874 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.29 |
Mean single sequence MFE | -32.06 |
Consensus MFE | -24.08 |
Energy contribution | -24.24 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.75 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3422778 96 - 22407834 AAAC--CGAGAGAACCGAUUGUCGACGCU-UUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU ..((--(((((((..((.....))....)-)))))))).((.(((((((((((((...))))))((((............))------)))))))))))...... ( -31.00) >DroSec_CAF1 11666 86 - 1 ------------AACCGAUUGUCGACGCU-UUUUUGGUGGCACAGCGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU ------------....(.((((((((((.-.(((((((((.....((..((((((...))))))...))....)).))))))------)..)))))))))))... ( -31.80) >DroSim_CAF1 11852 86 - 1 ------------AACCGAUUGUCGACGCU-UUUUUGGUGGCACAGCGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU ------------....(.((((((((((.-.(((((((((.....((..((((((...))))))...))....)).))))))------)..)))))))))))... ( -31.80) >DroEre_CAF1 11888 97 - 1 AAAACCCGAGGGAACCGAUUGUCGACGCU--UUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGCUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU ....((....))....(.((((((((((.--(((((((((.....((.(((((((...)))))).).))....)).))))))------)..)))))))))))... ( -33.20) >DroYak_CAF1 12623 92 - 1 AAAACA------A-------AUCGACGCUAUUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAAGUAGAAUUGGAAUCGUGUUGGCAACAGU ......------.-------.....(((((....)))))((.(((((((((((((...))))))........(((((......)))))..)))))))))...... ( -32.50) >consensus AAA_________AACCGAUUGUCGACGCU_UUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA______AUCGUGUUGGCAACAGU .........................((((......))))((.(((((((((((((...))))))(((.(....).)))............)))))))))...... (-24.08 = -24.24 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:44 2006