Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,421,110 – 3,421,293 |
Length | 183 |
Max. P | 0.964562 |
Location | 3,421,110 – 3,421,226 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -17.00 |
Energy contribution | -17.91 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.67 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3421110 116 - 22407834 ACCCUU-CAGUGGUAGUGAUAUUCCUCUUCCUCUUCCGUCUGAGUCAUCAUUAC--CAUCUUUUUCGAUGAUGGCAUCGCAGAGGAGCGUUGCGUAUGCC-ACCUGCAUAGUAAUUAUUG ......-...((((((((((....(((..............)))..))))))))--))((((((.(((((....))))).))))))..(((((.(((((.-....))))))))))..... ( -30.04) >DroSec_CAF1 10030 117 - 1 ACCCUCCCAGUGGUGGUGAUAUUCCUCUUCAUCUUCCGUCUGACUCAUCAUUAC--CAUCUUUUUCGAUGAUGGCAUCGCAGAGGAGCGUUGCGUAUGCC-CCCUGCAUAGUAAUUAUUG .......((((((.(((((.........)))))..))).)))(((........(--((((.........)))))....((((.((.((((.....)))).-))))))..)))........ ( -28.90) >DroAna_CAF1 12582 108 - 1 ACCCUUC------------UACACUCCUUCCUCUUCCGCUUGAAUCAUCAUAAUUUUAAUUUUUUUAACGAAUACUCCGGAGAGGUCUGUUGCGUAUGACGCCCUGCAUAGCAAUUAUUU .......------------..........(((((.(((..(((....))).....((((.....)))).........))))))))...(((((.((((........)))))))))..... ( -15.40) >DroSim_CAF1 10247 117 - 1 ACCCUCCCAGUGGUGGUGAUAUUCCUCUUCCUCUUCCGUCUGAGUCAUCAUUAC--CAUCUUUUUCGAUGAUGGCAUCGCAGAGGAGCGUUGCGUAUGCC-CCCUGCAUAGUAAUUAUUG .........(((((((((((....(((..............)))..))))))))--)))......(((((((.((...((((.((.((((.....)))).-))))))...)).))))))) ( -30.94) >DroEre_CAF1 10216 94 - 1 ACCC-----------------------UUCCUCUUCCGUCUGAAUCAUCAUUAC--CAUCUUUUUUGAUGAUGGCAUCGCAGAGGACCGUUGCGUAUGCC-CCCUGCAUAGUAAUUAUUC ....-----------------------.((((((..((.....(((((((....--.........))))))).....)).))))))..(((((.(((((.-....))))))))))..... ( -23.42) >DroYak_CAF1 11005 93 - 1 AC-C-----------------------UUCCUCUUCCGUCUGAAUCAUCAUUAC--CAUCUUUUUUGAUGAUGGCAUCGCAGAGGACCGUUGCGUAUGCC-CCCUGCAUAGUAAUUAUUC ..-.-----------------------.((((((..((.....(((((((....--.........))))))).....)).))))))..(((((.(((((.-....))))))))))..... ( -23.42) >consensus ACCCU______________UAUUCCUCUUCCUCUUCCGUCUGAAUCAUCAUUAC__CAUCUUUUUCGAUGAUGGCAUCGCAGAGGACCGUUGCGUAUGCC_CCCUGCAUAGUAAUUAUUG ............................((((((..((.....((((((.................)))))).....)).))))))..(((((.(((((......))))))))))..... (-17.00 = -17.91 + 0.92)
Location | 3,421,187 – 3,421,293 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -22.49 |
Energy contribution | -22.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.43 |
Structure conservation index | 0.96 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3421187 106 - 22407834 AUUAUAUAUAUAUCUCUUAUAUAUACUUAUUCGAUCACGAAAUCCGUGGCAACUUUGUAGCGGAUCCACCCUU-CAGUGGUAGUGAUAUUCCUCUUCCUCUUCCGUC ....((((((((.....))))))))........(((((...((((((.(((....))).))))))((((....-..))))..))))).................... ( -23.10) >DroSec_CAF1 10107 106 - 1 ACU-UAUAUGUAUAUCUUAUAUAUACUUAUCCGAUCACGAAAUCCGUGGCAACUUUGUAGCGGAUCCACCCUCCCAGUGGUGGUGAUAUUCCUCUUCAUCUUCCGUC ...-((((((((.....))))))))........(((((...((((((.(((....))).)))))).(((((.....).))))))))).................... ( -23.70) >DroSim_CAF1 10324 106 - 1 ACU-UAUAUGUAUAUCUUAUAUAUACUUAUCCGAUCACGAAAUCCGUGGCAACUUUGUAGCGGAUCCACCCUCCCAGUGGUGGUGAUAUUCCUCUUCCUCUUCCGUC ...-((((((((.....))))))))........(((((...((((((.(((....))).)))))).(((((.....).))))))))).................... ( -23.70) >consensus ACU_UAUAUGUAUAUCUUAUAUAUACUUAUCCGAUCACGAAAUCCGUGGCAACUUUGUAGCGGAUCCACCCUCCCAGUGGUGGUGAUAUUCCUCUUCCUCUUCCGUC ....((((((((.....))))))))........(((((...((((((.(((....))).))))))((((.......))))..))))).................... (-22.49 = -22.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:43 2006