| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,419,666 – 3,419,802 |
| Length | 136 |
| Max. P | 0.550874 |
| Location | 3,419,666 – 3,419,780 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 89.98 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -22.54 |
| Energy contribution | -23.66 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3419666 114 - 22407834 -CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCUUGGAGUCCCCGAGCCACCAUAGCAAUCAUCCUUCUUUUGCCACUGCAUCGAAAUAAUUUU -(((.((((.((((((.(((......((.....((((...........))))((((((.....)))))).......)).....)))..))))))))))....))).......... ( -31.60) >DroSec_CAF1 8574 113 - 1 -CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCUUUCCCCGCU-GGAGUCCCCGAGCCCCCACAGCAAUCAUCCUUCUUUUGCCACUGCAUCGAAAUAAUUUU -(((.((((.(((((((((.((((((((.....((((...........)))))))-)))).).))).((.......))..........))))))))))....))).......... ( -32.40) >DroSim_CAF1 8798 113 - 1 -CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCU-GGAGUCCCCGAGCCCCCACAGCAAUCAUCCUUCUUUUGCCACUGCAUCGAAAUAAUUUU -(((.((((.((((((.(((......((....(((((..((((..(((((.....-)))))...)))).)))))..)).....)))..))))))))))....))).......... ( -33.40) >DroEre_CAF1 8740 114 - 1 UCGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCCUUCCCCGCU-GGAGUCCCCGAGCCCCCAAAGCAAUCAUCUUCCUUUUACCACUGCAUCGAAAUAAUUUU ((((.(((((.(((((.((((.....((...((((((..((((...((((.....-))))....)))).)))))).))......))))))))))))))....))))......... ( -33.60) >DroYak_CAF1 9505 102 - 1 ----CGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGAUCCUCGUCUUUCCCCGUC-UGUGU--------CCCCAUUGCAAUCAUCUUCCUUUUACCACUGCAUCGAAAUAAUUUU ----.(((((.(((((.((((.....((.....((((..(.((........))..-.)..)--------)))....))......))))))))))))))................. ( -22.10) >consensus _CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCU_GGAGUCCCCGAGCCCCCACAGCAAUCAUCCUUCUUUUGCCACUGCAUCGAAAUAAUUUU .....(((((.(((((.(((......((....(((((..((((...((((......))))....)))).)))))..)).....)))..))))))))))................. (-22.54 = -23.66 + 1.12)
| Location | 3,419,701 – 3,419,802 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -25.85 |
| Energy contribution | -26.60 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3419701 101 - 22407834 CCAACAUGACCAGCA--------UGACCAU--------CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCUUGGAGUCCCCGAGCCACCAUAGCAA .....(((((..((.--------(((((((--------....)))))))...))(((.((((((....)))))))))..))))).....((((((.....))))))........... ( -30.00) >DroSec_CAF1 8609 100 - 1 CCAUCAUGACCACCA--------UGACCAU--------CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCUUUCCCCGCU-GGAGUCCCCGAGCCCCCACAGCAA ...((.(((((((..--------((.....--------))..)))))))...(.((..(((((((.....((((...........)))))))-))))..)))))((.......)).. ( -30.80) >DroSim_CAF1 8833 100 - 1 CCAUCAUGACCACCA--------UGACCAU--------CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCU-GGAGUCCCCGAGCCCCCACAGCAA ......(((((((..--------((.....--------))..)))))))...((((....)).......(((((..((((..(((((.....-)))))...)))).)))))..)).. ( -31.50) >DroEre_CAF1 8775 116 - 1 CCACCAUGGCCACCAUGACCAUUUGACCAUCCGACCAUCGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCCUUCCCCGCU-GGAGUCCCCGAGCCCCCAAAGCAA ....(((((...)))))....(((((((((.((.....))..))))))))).((((....))......((((((..((((...((((.....-))))....)))).)))))).)).. ( -36.90) >consensus CCAUCAUGACCACCA________UGACCAU________CGACGUGGUCAAAAGCGGAGUUCCAGCCACUUGGGGUCCUCGUCAUUCCCCGCU_GGAGUCCCCGAGCCCCCACAGCAA .......................(((((((............)))))))...((((....)).......(((((..((((..(((((......)))))...)))).)))))..)).. (-25.85 = -26.60 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:41 2006