| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,417,894 – 3,417,997 |
| Length | 103 |
| Max. P | 0.653703 |
| Location | 3,417,894 – 3,417,997 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -16.42 |
| Energy contribution | -17.79 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3417894 103 + 22407834 U-UUGGCCACGCAGGUUGUCAUUGGCGGCCGAAACUCAAAAAGUCCAAG------------AUAAAAUGCUAAUUUAU--CUUGUGGCCA-AGA-GGCUGUCAUUAAAUGAGGAGGGUUA (-((((((((...((((((.....))))))................(((------------(((((.......)))))--))))))))))-)).-((((.((.((....)).)).)))). ( -31.50) >DroSec_CAF1 6819 116 + 1 UUUUGGUCACGCAGGUUGUCAUUGACAGCCGAAACUCAAAAAGUCCAAGACGAGUUUUUUGAUUAAAUGCUAAUUUAU--CUUGUGGCCA-AGA-GGCUGUCAUUAAAUGAGGAGGGUUA ((((((((((...(((((((...)))))))((...((((((((..(.....)..)))))))).(((((....))))))--)..)))))))-)))-((((.((.((....)).)).)))). ( -32.30) >DroAna_CAF1 9423 107 + 1 -----GCC-UACCAGUUGUCAUUGGCAGCGGGCUCUCGAAAG-GCCA-----AGUUUUCUGAUAAAAUGCUAAUUUAGUGUUUGUGGUUGGAGA-ACAUGGCACUCGGACGGGGUGUUUA -----(((-(.((.(((((.....)))))(((....(....)-((((-----.((((((..((.((((((((...))))))))...))..))))-)).)))).)))))...))))..... ( -37.50) >DroSim_CAF1 7049 115 + 1 UUUUGGUCACGCAGGUUGUCAUUGACAGCCGAAACUCAA-AAGUCCAAGACGAGUUUUUUGAUAAAAUGCUAAUUUAU--CUUGUGGCCA-AGA-GGCUGUCGUUAAAUGAGGAGGGUUA ((((((((((...(((((((...)))))))(((((((..-..(((...))))))))))..((((((.......)))))--)..)))))))-)))-((((.((.((....)).)).)))). ( -35.60) >DroEre_CAF1 6958 116 + 1 UUUG-GCCGGCCAGGUUGUCAUUGACAGCCGAAGCUCAAAAAGUCCAAGACGAGUUUUUUGAUAAGCUGCUAAUUAAU--CUUGUGGCCA-AGAGAGCUGUCUUUAAAUGAGGAGGGUUA ((((-((((....(((((((...)))))))..(((((((((((..(.....)..))))))))...)))..........--....))))))-))..((((.(((((....))))).)))). ( -35.50) >DroYak_CAF1 7653 117 + 1 CUUGGGCCAGGCAGGUUGUCAUUGACAGUCGAAACUCAAAAAGUCCAAGACGAGUUUGUUGAUAAAAUGCUAAUUUAU--CUUGUGGCCA-AGAAGGCUGUCAUUAAAUGAGGAGGGUUG (((((.(((((((..((((((..(((.(((...(((.....)))....)))..)))...))))))..)))).......--....))))))-))..((((.((.((....)).)).)))). ( -28.50) >consensus UUUUGGCCACGCAGGUUGUCAUUGACAGCCGAAACUCAAAAAGUCCAAGACGAGUUUUUUGAUAAAAUGCUAAUUUAU__CUUGUGGCCA_AGA_GGCUGUCAUUAAAUGAGGAGGGUUA ....(((((((..(((((((...)))))))(((((((..............)))))))........................)))))))......((((.((.((....)).)).)))). (-16.42 = -17.79 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006