Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,415,032 – 3,415,132 |
Length | 100 |
Max. P | 0.981730 |
Location | 3,415,032 – 3,415,132 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 95.32 |
Mean single sequence MFE | -23.96 |
Consensus MFE | -21.38 |
Energy contribution | -21.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.89 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3415032 100 + 22407834 ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUAAGAAAACCUCGCCGGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA ((((..(((.(((((......)))))....)))..)))).-...............((((((..(((....(((.....)))...)))))))))....... ( -23.40) >DroSec_CAF1 3972 100 + 1 ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA ((((..(((.(((((......)))))....)))..)))).-...............((((((..(((....(((.....)))...)))))))))....... ( -23.40) >DroSim_CAF1 4218 99 + 1 ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AA-AAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA ((((..(((.(((((......)))))....)))..)))).-..-............((((((..(((....(((.....)))...)))))))))....... ( -23.40) >DroEre_CAF1 4196 101 + 1 ACUACUUGAGUGGCUGGAAAUGGCCGAAAAUCGGGUAGUGAAAAAAAUUAAGAAAACCUCACCAGGCAAUUUAGGUAUUCAGUUAGCUGCGAGGAGAUAAA (((((((((.(((((......)))))....))))))))).................(((((((..........)))...(((....))).))))....... ( -26.50) >DroYak_CAF1 4633 100 + 1 ACUACUUGAGUGGCUGAAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUACGAAAACCUCGCCAGGCAAUUUUUGUAUUCAGUUAGCUGCGAGGAGAUAAA ((((..(((.(((((......)))))....)))..)))).-...............((((((..(((.....(((....)))...)))))))))....... ( -23.10) >consensus ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA_AAAAAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA ((((..(((.(((((......)))))....)))..)))).................((((((..(((((((.........)))).)))))))))....... (-21.38 = -21.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:32 2006