| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,414,845 – 3,414,961 |
| Length | 116 |
| Max. P | 0.574736 |
| Location | 3,414,845 – 3,414,961 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -34.53 |
| Consensus MFE | -13.66 |
| Energy contribution | -14.61 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3414845 116 - 22407834 UUUUUAUGGCCAACAAUCGUGGAUG-UUGGUGUUUUAUUGUUUGA--CUUGUUUGAAUCGGGUGGAAAGGGCAAACACUAAACACUGGCAAUGAUUGGCUUUAGUUUGCCGCCAUGUAA- ....((((((....((((((...((-(..((((((...((((((.--((..(((.(......).)))..))))))))..))))))..)))))))))(((........)))))))))...- ( -36.30) >DroSec_CAF1 3778 117 - 1 UUUUUAUGGCCAACAAUCGUGGAUGGUUGGUGUUUUAUUGUUUGA--CUUGUUUGAAUCGGGAGGAAAGGGCAAGCACUGAACAUUGGCAAUGAUUGGCUUUAGUUUGCCGCCAUGUAA- ....((((((....((((((.....((..((((((...((((((.--((..(((....(....))))..))))))))..))))))..)).))))))(((........)))))))))...- ( -33.60) >DroAna_CAF1 6439 100 - 1 -UUUUUUGGCCGAAAGCAGUAG----UUGAUUUCUCAUUGUUCGAGGCUCGUGU------GGUUGAAAGGGCAGCCAUUCAGCCUUGA-------UGGCUUU--UUGGCCAUCACAUCAU -.....(((((((((((.....----.(((....)))....((((((((.(.((------(((((......))))))).)))))))))-------..)).))--)))))))......... ( -36.60) >DroSim_CAF1 4032 117 - 1 UUUUUAUGGCCAACAAUCGUGGCUGGUUGGUGUUUUAUUGUUUGA--CUUGUUUGAAUCGGGAGGAAAGGGCAAGCACUGAACAUUGGCAAUGAUUGGCUUUAGUUUGCCGCCAUGUAA- ....((((((....((((((.....((..((((((...((((((.--((..(((....(....))))..))))))))..))))))..)).))))))(((........)))))))))...- ( -33.60) >DroEre_CAF1 4036 101 - 1 UUUUUAUGGCCAACAGUU-UGGAU---------------GUUUGA--CUUGUUUGAAUCGGGCGGAAAGGGCAAACACUGAACAUUGGCAGUGAUUGGCUUUAGUUUGCCGCCAUGUAA- ....((((((...(.(((-..(((---------------(.....--..))))..))).)((((((((((.(((.(((((........))))).))).))))..))))))))))))...- ( -30.80) >DroYak_CAF1 4452 116 - 1 UUUUUAUGGCCAAAAGUUGUGGAUG-UUGGUCUUUUAUUGUUUGA--CUUGUUUGCAACGGGAGGAAAGGGCAAGCACUGAACAUUGGCAGUGAUUGGCUUUAGUUUGCCGCCAUGUAA- ....((((((.....((((..(((.-..((((...........))--)).)))..))))((.(((..(((((...(((((........)))))....)))))..))).))))))))...- ( -36.30) >consensus UUUUUAUGGCCAACAAUCGUGGAUG_UUGGUGUUUUAUUGUUUGA__CUUGUUUGAAUCGGGAGGAAAGGGCAAGCACUGAACAUUGGCAAUGAUUGGCUUUAGUUUGCCGCCAUGUAA_ ....((((((.......................((((.((((((...(((................)))..)))))).))))..............(((........))))))))).... (-13.66 = -14.61 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:31 2006