Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,414,274 – 3,414,372 |
Length | 98 |
Max. P | 0.937350 |
Location | 3,414,274 – 3,414,372 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 74.50 |
Mean single sequence MFE | -25.19 |
Consensus MFE | -11.86 |
Energy contribution | -12.79 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -2.56 |
Structure conservation index | 0.47 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3414274 98 - 22407834 CUUUCUUUUUU---------UGCUUCGAUG---------GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA--CAGUGCAUCCAUCAACUGAUUGUUCAACUGU ..........(---------(((...((.(---------((((((.......(((.....)))......))))))).)).))))(--((((....(.(((....))).)....))))) ( -25.92) >DroAna_CAF1 6003 102 - 1 CCUUC----UAU--------UUCCACAAUAAUACACAAUUCCGACUGCCUCCGACAAUUUGUCCCCCUCGG--GCCCUCGACAAA--CAGUGCAUCUAUCAACUGAUUGUUGAACUGU .....----...--------.....(((((((.........(((..((((..(((.....)))......))--))..))).....--((((..........)))))))))))...... ( -16.90) >DroEre_CAF1 3434 107 - 1 CUCUUUUGUUUUUUUCUGUCUGCUCCGAUG---------GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA--CAGUGCAUCCAUCAACUGAUUGUUCCACUGC ....................(((...((.(---------((((((.......(((.....)))......))))))).)).)))..--(((((...(.(((....))).)...))))). ( -25.82) >DroYak_CAF1 3864 101 - 1 CCUUCCUGUUUU--------UGCUUCGAUG---------GUCGCCGGCUUCUGGCAAUUUGUCCUCCUCGGCGACCCUCUGCAAACACAGUGCAUCCAUCAACUGAUUGUUUCACUGU ..........((--------(((...((.(---------((((((((.....(((.....)))....))))))))).)).))))).((((((...(.(((....))).)...)))))) ( -32.10) >consensus CCUUCUUGUUUU________UGCUUCGAUG_________GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA__CAGUGCAUCCAUCAACUGAUUGUUCAACUGU .......................................((((((.......(((.....)))......))))))............(((((...(.(((....))).)...))))). (-11.86 = -12.79 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:29 2006