Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,412,671 – 3,412,786 |
Length | 115 |
Max. P | 0.618377 |
Location | 3,412,671 – 3,412,786 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 84.03 |
Mean single sequence MFE | -25.95 |
Consensus MFE | -13.08 |
Energy contribution | -15.60 |
Covariance contribution | 2.52 |
Combinations/Pair | 1.07 |
Mean z-score | -2.61 |
Structure conservation index | 0.50 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3412671 115 - 22407834 GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAUACAUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAACUGAAACUGCAACUGCAGCUGCUGUCAU ...(((...(((((.((((((..(((.(((..............))).)))..))))))..(((..(((....)))....)))..........((((....)))))))))))).. ( -26.14) >DroSec_CAF1 1678 107 - 1 GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAU ...(((...(((((.((((((..(((.(((.(((....))--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -28.40) >DroAna_CAF1 4297 101 - 1 GAAGAUCAAGCCCCAAACAAAAACCAAUAACAUUUUAUAU--AUUUAAUUGAGUUUCGCAAGACAAAAAGAAACUCGUUUGCG------------GCAGUAACCGCUGCUGUCAC ...(((...(((.(((((........((((....))))..--........(((((((............)))))))))))).)------------))((((.....))))))).. ( -20.00) >DroSim_CAF1 1928 107 - 1 GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAU ...(((...(((((.((((((..(((.(((.(((....))--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -28.40) >DroEre_CAF1 1979 105 - 1 GAAGAUCAGAGCAGAGCAAAAAACGAAUAACUAUAU--AU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAA ...(((...(((((.((((((..(((.(((.((...--.)--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -26.80) >consensus GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU__AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA______CUGCAACUGCAGCUGCUGUCAU ...(((...(((((.((((((..(((.(((..............))).)))..))))))..(((..(((....)))....)))..........((((....)))))))))))).. (-13.08 = -15.60 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:28 2006