Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 388,988 – 389,088 |
Length | 100 |
Max. P | 0.944280 |
Location | 388,988 – 389,088 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.92 |
Mean single sequence MFE | -21.92 |
Consensus MFE | -20.74 |
Energy contribution | -20.72 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.94 |
Structure conservation index | 0.95 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 388988 100 - 22407834 CAAAGUGGCGCUAAUUAGUUUGAGUCAUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC----------------ACACAUACACAAGAGCC----C .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))...............----------------.................----. ( -21.70) >DroPse_CAF1 23854 106 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCGACACACGAAACACACAGAUGCACAC----------ACACACUAAUGCA----A ....(((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))).))................((((...----------.........))))----. ( -23.40) >DroSim_CAF1 4493 100 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC----------------AUACACACACAAGAGCC----C .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))...............----------------.................----. ( -22.00) >DroEre_CAF1 11120 92 - 1 CAAAGUGGCGCUAAUUAGUUCGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAAC--------------------ACACACACAUAAGC-------- .....((((((.((((((((.(.((.(((((.(....).)))))...)).).))).)))))))))))...........--------------------..............-------- ( -17.90) >DroYak_CAF1 4661 110 - 1 CAAAGUGGCGCUAAUUAGUUCGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAUCGCACA------CACACUCGCACACACACACAAGUGCA----G ....((((((.......((.(((.((((((((.((((.....))))..(((((......)))))))))...)))).))).)).------......))).))).(((....)))..----. ( -22.94) >DroAna_CAF1 23835 104 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCGACACACGAAACACAC----------------ACACACAGCUCACUGGCACACA ....(((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))).)).............----------------.......(((....)))..... ( -23.60) >consensus CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC________________ACACACACACAAGUGCC____A .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))..................................................... (-20.74 = -20.72 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:48 2006