Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,407,456 – 3,407,555 |
Length | 99 |
Max. P | 0.858337 |
Location | 3,407,456 – 3,407,555 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -31.59 |
Consensus MFE | -22.17 |
Energy contribution | -22.20 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.36 |
Mean z-score | -1.58 |
Structure conservation index | 0.70 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3407456 99 + 22407834 ---CCUACCAAAA-------CCUACAUGGGAUUUCUGGUGUCGGGUAUAUCCCGAUUGCUGGGCAGAGCAUCGCUGGCCUCCUGAUUGAAGCGAUUCCUAAUAUAGGGA ---..........-------((((..(((((..((..((((((((.....))))).)))..))......((((((..............)))))))))))...)))).. ( -28.14) >DroVir_CAF1 61281 96 + 1 ------AUUUUCA-------CUUACAUGGGAUUCCGGGUGUCGGGUAUUUCACGAUUGCUGGGCAGCGCAUCGCUGGCUUCCUGAUUGAAGCGAUUCCGUAUGUACGGA ------.......-------(.(((((((((.(((((..((((((....)).))))..)))))(((((...)))))(((((......)))))...))).)))))).).. ( -28.70) >DroPse_CAF1 41844 107 + 1 GUCUCU--CAAAAUCUCCUUCUUACAUGGGAUUCCUCGUGUCGGGUAUCUCUCGAUUACUGGGCAGUGCAUCGCUGGCCUCUUGAUUGAAACGAUUCCUGAUGUAGGGA ......--.......((((........)))).((((..(((((((.(((..(((((((..((.(((((...))))).))...)))))))...))).)))))))..)))) ( -34.50) >DroWil_CAF1 53805 95 + 1 -----U--CUAUA-------CUUACAUGGGAUUUCUUGUAUCGGGAAUCUCUCGAUUACUGGGCAGUGCAUCGCUGGCCUCUUGAUUGAAACGAUUUCUGAUAUAAGGA -----(--((((.-------.....)))))..(((((((((((((((((..(((((((..((.(((((...))))).))...)))))))...))))))))))))))))) ( -35.30) >DroAna_CAF1 36024 97 + 1 ---CCC--UUUCA-------CUUACAUUGGAUUCCUGGUGUCGGGAAUCUCACGAUUACUGGGCAGGGAGUCGCUGGCCUCCUGGUUGAAGCGGUUUCUUAUGUAGGGA ---...--.....-------(((((((.(((((((((....)))))))))..............(((((..((((.(((....)))...))))..)))))))))))).. ( -32.70) >DroPer_CAF1 41965 107 + 1 AUCUCU--CGAAAUCUCCUUCUUACAUGGGAUUCCUCGUGUCGGGUAUCUCUCGAUUACUGGGCAGUGCAUCGCUGGCCUCUUGAUUGAAACGAUUCCUAAUGUAGGGA ......--..........(((((((((((((....((((((((((.....))))))....((.(((((...))))).))...........)))).)))).))))))))) ( -30.20) >consensus ____CU__CUAAA_______CUUACAUGGGAUUCCUGGUGUCGGGUAUCUCUCGAUUACUGGGCAGUGCAUCGCUGGCCUCCUGAUUGAAACGAUUCCUAAUGUAGGGA ....................(((((((((((.((...((((((((.....))))).))).((.(((((...))))).)).............)).)))).))))))).. (-22.17 = -22.20 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:26 2006