Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,406,381 – 3,406,496 |
Length | 115 |
Max. P | 0.703869 |
Location | 3,406,381 – 3,406,496 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -21.70 |
Energy contribution | -21.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.34 |
Structure conservation index | 0.71 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3406381 115 + 22407834 AGACACUCUGUGAUAUAUAGAAGUACAACUUCAAGUUCGAUAUGCACAAUGCCGAGUGAUUUCUCUCAGUGUACUUACUUGCCGAAGGGAAUGUUCUUGGCGAGUGGCACAGCGU ...(((((((((.(((((.((((.....)))).......)))))))))..((((((....((((((..(.(((......))))..))))))....)))))))))))......... ( -32.10) >DroSec_CAF1 28902 91 + 1 AG------------------AAGUACA------GGGUCAACGUGUACAAUGCCGAGUGAUUCCUUUCAGUGUACUUACUUGCCGAAGGGAAUGUUCUUGGCGAGUGGCACGGCGU ..------------------..(((((------.(.....).))))).(((((...(((......)))((((...((((((((.(((((....)))))))))))))))))))))) ( -32.10) >DroSim_CAF1 29014 90 + 1 AG------------------AAGUACA------GGGUCAACAUGUGCAAUGCCGAGUGAUUC-UCUCAGUGUACUUACUUGCCGAAGGGAAUGUUCUUGGCGAGUGGCACGGCGU ..------------------..(((((------.(.....).))))).((((((((......-.))).((((...((((((((.(((((....)))))))))))))))))))))) ( -31.40) >DroEre_CAF1 28916 97 + 1 AG------------------AAGUACAAGCCCAAGGCCAAUAUGUAUCAGGCCAUGUGAUUUCGCUCAGUGUACUCACUUGCCGAAGGGUAUGUUCUUGGCGAGGGGCACGGCAU ..------------------..((....((((...(((((.(((((((.(((...((((...(((...)))...))))..)))....)))))))..)))))...))))...)).. ( -31.30) >DroYak_CAF1 29960 97 + 1 AU------------------CAGUACAAACCCAAAGCCCAUAUGUAUGUGGUCAUGUGAUUUCGUUCAGUGUACUCACUUGCCGAAGGGAAUGUUCUUGGCGAGGGGCACGGCAU ..------------------...............(((((((((........))))))..........((((.....((((((.(((((....)))))))))))..))))))).. ( -26.10) >consensus AG__________________AAGUACAA___CAAGGUCAAUAUGUACAAUGCCGAGUGAUUUCUCUCAGUGUACUUACUUGCCGAAGGGAAUGUUCUUGGCGAGUGGCACGGCGU ......................(((((...............)))))...(((...(((......)))((((...((((((((.(((((....)))))))))))))))))))).. (-21.70 = -21.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:25 2006