Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,392,530 – 3,392,628 |
Length | 98 |
Max. P | 0.776462 |
Location | 3,392,530 – 3,392,628 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -16.50 |
Energy contribution | -17.41 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.14 |
Mean z-score | -2.58 |
Structure conservation index | 0.56 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3392530 98 + 22407834 UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG ..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30) >DroSec_CAF1 15061 98 + 1 UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG ..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30) >DroSim_CAF1 15198 98 + 1 UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG ..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30) >DroEre_CAF1 15021 99 + 1 UAUUCACACAAACU--ACAAACUUGGCGCAAAACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGA ..............--.....(((((.((...(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -29.90) >DroYak_CAF1 15599 100 + 1 UAUUCACACAAACUGCACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGAAGAAAAGGACUUU----------GCG------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGA .....................(((((.((..-(((.....))--).)))))))..((((((((..((----------((.------..((((.....))))..))))..)))))))).. ( -29.10) >DroAna_CAF1 21384 109 + 1 UAAAGA-------C--ACAAACUUGAUGCCA-ACUUUGUAGUGCAAUUCCAAGGGUCAAAGGACCUGGGGUAUCCUUACAGGCGGCAGCAGCACGACGUGGCAAUAACUUCCUUUUCGU ......-------.--..........(((((-....(((.((((....((..(((((....)))))..))...........((....)).)))).))))))))................ ( -25.90) >consensus UAUUCACACAAACU__ACAAACUUGGCGCAA_ACUUUGUAAG__UAGCCCAGGACGAAAAGGACUUU__________GCA______AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG .....................(((((.((.................))))))).(((((((((..............((........))(((.....))).........))))))))). (-16.50 = -17.41 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006