Locus 1273

Sequence ID 2L_DroMel_CAF1
Location 3,386,144 – 3,386,235
Length 91
Max. P 0.671059
window2081

overview

Window 1

Location 3,386,144 – 3,386,235
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.97
Mean single sequence MFE -28.92
Consensus MFE -17.17
Energy contribution -17.65
Covariance contribution 0.48
Combinations/Pair 1.23
Mean z-score -1.99
Structure conservation index 0.59
SVM decision value 0.29
SVM RNA-class probability 0.671059
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3386144 91 - 22407834
---------CAUGAGUAAUGGCCCUUGGCGAAGGAGCGAGAUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUCCUUU-CCGUGUGGGAAGAAUGGGAGGAC
---------(((((((......((((....)))).(((....)))...)))))))...............((((((.-((((.........)))))))))) ( -26.40)
>DroPse_CAF1 14490 87 - 1
CUCGUCUGGCAUGAGCCAUGGCCUGGGGUG-----------GCACAAAGCUCAUGUUAAUUACAAAAUAAGUCCCU---CGUACGGGGACCAUGCUGGGAU
(((...((((((((((..(((((......)-----------)).))..))))))))))............((((((---.....))))))......))).. ( -31.20)
>DroSec_CAF1 8991 91 - 1
---------CAUGAGUAAUGGCCCUUGGCGAAGGAGCGAGCUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUUCAUU-CCGUGUGGGAACAAUGGGAGGAC
---------.....(((((.((((((.....))).(((((((.....)))))))))).))))).......((((.((-((((.((....)))))))))))) ( -27.50)
>DroSim_CAF1 9116 91 - 1
---------CAUGAGUAAUGGCCCUUGGCGAAGGAGCGAGCUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUCCAUU-CCGUGUGGGAACAAUGGGAGGAC
---------.....(((((.((((((.....))).(((((((.....)))))))))).))))).......((((.((-((((.((....)))))))))))) ( -30.40)
>DroEre_CAF1 8938 92 - 1
---------CAUGAGUAAUGGCCCUUGGCGAAGAAGCCAGCUCACAGAGCUCGUGGUAAUUACAAAAUAAGUCCUUUUCCGUGUGGGAACAAUGGGAGGAC
---------(((((((..((....(((((......)))))....))..)))))))...............((((((..((((.((....)))))))))))) ( -29.90)
>DroYak_CAF1 9361 92 - 1
---------CAUGAGUAAUGGCCCUUGGCGAGGAAGCGAACUCACAAAGCUCGUGGUAAUUACAAAAUAAGUCCUUUCCCGUGUGGGAGCAAUGAGAGGAC
---------(((((((..(((((...)))(((........))).))..)))))))...............((((((((...(((....)))..)))))))) ( -28.10)
>consensus
_________CAUGAGUAAUGGCCCUUGGCGAAGGAGCGAGCUCACAAAGCUCGUGGUAAUUACAAAAUAAGUCCUUU_CCGUGUGGGAACAAUGGGAGGAC
.........(((((((..(((((...)))((..........)).))..)))))))...............((((((..((((.((....)))))))))))) (-17.17 = -17.65 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006