| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,381,946 – 3,382,046 |
| Length | 100 |
| Max. P | 0.844608 |
| Location | 3,381,946 – 3,382,046 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.26 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -13.71 |
| Energy contribution | -14.38 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3381946 100 - 22407834 ---UUUCCC--CCCCAUUGUGGCCAGCGGCCAAAACACACAUCAAUGGGAUGUAAUCUCUGGAAGCCAUGGGAGCAACUGGGGGACUCACACGAGUUAAGAGGAA ---.(((((--(((((((((..(((((..(((......(((((.....)))))......)))..))..)))..)))).))))))((((....)))).....)))) ( -35.00) >DroSec_CAF1 4708 89 - 1 ---UU-------------UUGGCCAGCGGCCAAAACACACAUCAAUGGGAUGUAAUCUCUGGAAGCCGCCGGAGCAACUGGGGGACUCACAAGAGUUAAGAGGAA ---((-------------((((((...))))))))...(((((.....)))))..(((((.....((.((((.....)))).))((((....))))..))))).. ( -29.00) >DroSim_CAF1 4809 95 - 1 ---UUUCCC---CCCAUGUUGGCCAGCGGCCAAAACACACAUCAAUGGCAUGUAAUCUCUGGAAGCCGCGGGAGCAA----GGGACUCACAAGAGUUAAGGGGAA ---.(((((---(((.(((...((.(((((........(((((....).))))..((....)).))))).)).))).----))(((((....)))))..)))))) ( -31.20) >DroEre_CAF1 4655 92 - 1 -----------CCACAUUUUGGCCAGCGGCCAAAACACACAUCAAUGGGAUGUAAUCUGUUGAAGCCACGGGAGCAGC-GGGCAACUGAAAAG-GUUAAGAGGAA -----------.....((((((((...))))))))...(((((.....)))))..(((.((((.(((.((.......)-))))..((....))-.)))).))).. ( -24.40) >DroYak_CAF1 4857 92 - 1 ---UAUCCCCACCCCAUUUUGGCCAGCGGCCAAAACACACAUCAAUGGGAUGUAAUCUCCUGAAGCAAUGGGUA---------UACUGAAAAG-GUUAAGCGGAU ---.((((.(((((..((((((((...))))))))...(((((.....)))))................)))).---------..((....))-.....).)))) ( -23.50) >DroAna_CAF1 5024 100 - 1 AGGCUUGC---ACACUUUUUGGCCAGCGGCCAGAGUACACAUCGAUGGGAUGUAAUCUCUGAAAGCCGUUGGAGGAGUUUGCAGAUUGACAAGGGUUAAGAGC-- ..((((((---(.(((((....(((((((((((((...(((((.....)))))...)))))...)))))))).))))).)))...(((((....)))))))))-- ( -38.10) >consensus ___UUUCC___CCCCAUUUUGGCCAGCGGCCAAAACACACAUCAAUGGGAUGUAAUCUCUGGAAGCCACGGGAGCAAC_GGGGGACUCACAAGAGUUAAGAGGAA ................((((((((...))))))))...(((((.....)))))...((((((......))))))............................... (-13.71 = -14.38 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:15 2006