Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,380,160 – 3,380,253 |
Length | 93 |
Max. P | 0.724471 |
Location | 3,380,160 – 3,380,253 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.55 |
Mean single sequence MFE | -14.51 |
Consensus MFE | -14.49 |
Energy contribution | -14.60 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 1.00 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3380160 93 - 22407834 AAAACCACCUCUUUUUCCCACC--CCC-AAGGACACUUUAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUAAUGGUGCUACAUUUU .....((((..((((((((...--...-..(((..(((.....)))..)))......((((.....)))))).))))))....))))......... ( -12.20) >DroSec_CAF1 2976 93 - 1 AAAACCAU---UUUUUCCCACCCCCCCUAAGGACACUUGAAAAAAGGAUCCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((---((((((((...........(((..(((.....)))..)))......((((.....)))))).)))))..)))))).......... ( -16.70) >DroSim_CAF1 3015 92 - 1 AAAACCAU---UUUUUCCCAGCCCCCC-AAGGACACUUGAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((---((((((((.......(-(((....)))).........((((..............)))))).)))))..)))))).......... ( -14.64) >consensus AAAACCAU___UUUUUCCCACCCCCCC_AAGGACACUUGAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((...((((((((...........(((..(((.....)))..)))......((((.....)))))).))))))..))))).......... (-14.49 = -14.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:14 2006