Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,365,741 – 3,365,842 |
Length | 101 |
Max. P | 0.991278 |
Location | 3,365,741 – 3,365,842 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -25.66 |
Energy contribution | -25.02 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.15 |
Mean z-score | -1.74 |
Structure conservation index | 0.93 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3365741 101 - 22407834 AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGGGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCAAAC ......((((..(((((((((..((((......(((..(((((............)))))..)))..((......))))))...))))))))))))).... ( -29.40) >DroSec_CAF1 56450 101 - 1 AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCCAAC ....(.((((..(((((((((..((((......((((..((((............))))))))....((......))))))...))))))))))))))... ( -25.60) >DroSim_CAF1 52535 101 - 1 AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCCAAC ....(.((((..(((((((((..((((......((((..((((............))))))))....((......))))))...))))))))))))))... ( -25.60) >DroEre_CAF1 50975 100 - 1 AACAGAGUGUUGGUGCAAACAGGUGGCUAA-AAGUCAUAGGCAACGAUAUCAAACUGCGUGGCGCGAUCCAUUCAGAGUUAAAAUGUUUGUACACGCAACC ......((((..(((((((((..(((((..-........(....).........(((.((((......)))).))))))))...))))))))))))).... ( -27.00) >DroYak_CAF1 52236 101 - 1 UAUAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAUAGGUAACGAUACCAAACUGCGUGGCGCGAUCCAUUUAGAUCUAAAAUGUUUGCACACGCAACC ......((((..(((((((((.(((((......))))).((((....))))...(((.((((......)))).)))........))))))))))))).... ( -30.90) >consensus AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCAAAC ......((((..(((((((((((((((......)))...(....)...)))...(((..(((......)))..)))........))))))))))))).... (-25.66 = -25.02 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006