Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,364,206 – 3,364,326 |
Length | 120 |
Max. P | 0.838064 |
Location | 3,364,206 – 3,364,326 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.91 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -17.64 |
Energy contribution | -16.62 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.50 |
Mean z-score | -1.65 |
Structure conservation index | 0.58 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3364206 120 - 22407834 UCGGAUAACAAUAAGACCAGGGAGAGCUCACGCAAAUUGAACAAGAAGAUGAAACAGAAUGCCAAGGAGCUGACUCUCAGCUCGGUGAAGCCGACGGAGCUAUCGGUGAGCGUCACCAUG ..............(((..((((((((((..(((..(((..((......))...)))..)))....)))))..))))).(((((.(((((((....).))).))).))))))))...... ( -31.40) >DroVir_CAF1 97763 117 - 1 UCGGAUAA---UAAAGCCAGCGACAAUACGCGUAAAUCAAAUAAGAAAAUGAAGGCCAAUGCCAAAGAGCUGACACUCAGCUCCGUCAAGGCAACGGAGCAAUCGGUGGCCGUCACACUC ..((....---.....)).(((......)))..................(((.((((..((((...((((((.....))))))......))))((.((....)).)))))).)))..... ( -32.00) >DroGri_CAF1 60559 117 - 1 UCAGACAA---UAAAAUCAACGACAAUACACGCAAAUCCAACAAGAAAAUGAAGACCAAUGCCAAAGAGCUGACACUCAGCUCCAUCAAGGCAGCGGAGCAAUCAGUUAGCGUCACUCUU ........---..........(((......(((...((......)).............((((...((((((.....))))))......)))))))((....)).......)))...... ( -22.70) >DroWil_CAF1 174038 117 - 1 UCAGAUAACCAAAAGGCC---GAUAAUACACGCAAAUCGAAUAAGAAAAUGAAAACCAAUGCCAAGGAGCUCACCCUGAGCUCAGUUAAGCCUGCCGAACAAACGGUGGGCGUCACAUUA ...((((((.....((((---(((...........))))..........((.....))..)))...((((((.....)))))).)))..(((..(((......)))..))))))...... ( -30.80) >DroAna_CAF1 59076 120 - 1 UCGGACAACAACAAGACCAGGGAGAGUUCACGGAAACUCAACAAGAAGAUGAAACAGAACGCCAAAGAGUUGACGCUCAGCUCCGUGAAGCCGGCGGAGCAAUCGGUCAGUGUCACCAUG ..((...(((....((((..((...((((..(....)(((.(.....).)))....)))).))...((((....)))).(((((((.......)))))))....))))..)))..))... ( -33.00) >DroPer_CAF1 97435 114 - 1 UCGGACAACAACAAAGAC------AGUAACCGAAAGCUGAGCAAGAAGAUGAAACAGAAUGCCAAAGAGCUCACGCUGAGCUCCGUGAAGCCUGCGGAGCAGUCGGUGGGCGUCACCAUG ...............(((------.((.(((((.((((((((..........................))))).)))..(((((((.......)))))))..)))))..)))))...... ( -32.97) >consensus UCGGACAACAAUAAAACCAG_GACAAUACACGCAAAUCGAACAAGAAAAUGAAACACAAUGCCAAAGAGCUGACACUCAGCUCCGUGAAGCCAGCGGAGCAAUCGGUGAGCGUCACCAUG ...(((............................................................((((((.....))))))......((.(((.((....)).))).)))))...... (-17.64 = -16.62 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006