Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,331,964 – 3,332,076 |
Length | 112 |
Max. P | 0.533332 |
Location | 3,331,964 – 3,332,076 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -27.05 |
Consensus MFE | -16.76 |
Energy contribution | -16.27 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.30 |
Mean z-score | -1.38 |
Structure conservation index | 0.62 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3331964 112 - 22407834 AAAACUGGCACUGAAUUGAUUGCUAAUAAGCAGGA-CAGCGGCAGAAGCGUAGGCCUUAAAUGCAGGUCUGGUUACUAAGGAUUAUGGAAAUUAGUGAAAUUGAUAUAUAAAA ....(((.(.(((......(((((....)))))..-))).).))).....(((((((.......))))))).(((((((............)))))))............... ( -22.60) >DroSec_CAF1 18409 112 - 1 AAAACUGGCACUGAAUUGAUUGCUAAUGAGCAGGA-CAGCGGCAGAGGCGUAGGCCUUAAAUGCAGGUCUGGUAACUGAGGAUUGAGGAAAGGAGUGAAAUCGAUAUAUAAAA ....((..(.((.((((...((((....))))(((-(.(((...(((((....)))))...)))..))))..........)))).)))..))..................... ( -22.80) >DroSim_CAF1 18446 112 - 1 AAAACUGGCACUGAAUUGAUUGCUAAUGAGCAGGA-CAGCGGCAGAGGCGUAGGCCUUGAAUGCAGGUUUGGUAACUAAGGAUUGAUGAAAGGAUUGAAAUCGAUAUAUGAAA ......(..((..((((..(((((....)))))..-..(((...(((((....)))))...))).))))..))..).....((((((............))))))........ ( -23.50) >DroEre_CAF1 17251 111 - 1 AAAACUGGCACUGAAUUGGUUGCUAAUGAGCAGAA-CGGCGGCAGAGGCGUAAGCCUUAAAUGCUGGCUUGGUAACUAG-GAUUAAAGAAAGAAUGUGAAUAGAUACAUCAUU ....((..(..(((.(((((((((...((((....-(((((...(((((....)))))...))))))))))))))))))-..)))..)..)).(((((......))))).... ( -28.70) >DroYak_CAF1 18006 112 - 1 AAAACUGGCACUGAAUUGGUUGCUAAUGAGCAGGA-CAGCGGCGGAGGCGUAGGCCUUAAAUGCUGGUUUGGUAACUAGGGAUUAAGGAAAGAAUUAAAGUAAAUAUAUAAUU ....((((.((..(((...(((((....)))))..-(((((...(((((....)))))...))))))))..))..)))).................................. ( -26.70) >DroPer_CAF1 47234 111 - 1 GAAACUGCCGCUGAACUGGUUGCAAAUGAGUAGAGUCAGC-GCCGAGGCAUAGGCCUUGAAAGCGGGCCUGGUGACUACACAAUGGGAAAAGUUGC-AAGUCCUGGGUUUCAA (((.((((((((((.(((.((......)).)))..)))))-).((((((....))))))...))))(((..(.((((...((((.......)))).-.)))))..)))))).. ( -38.00) >consensus AAAACUGGCACUGAAUUGAUUGCUAAUGAGCAGGA_CAGCGGCAGAGGCGUAGGCCUUAAAUGCAGGUCUGGUAACUAAGGAUUAAGGAAAGAAGUGAAAUCGAUAUAUAAAA ....(((.(.(((......(((((....)))))...))).).)))..((.((((((.........))))))))........................................ (-16.76 = -16.27 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:00 2006