Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 383,649 – 383,769 |
Length | 120 |
Max. P | 0.855284 |
Location | 383,649 – 383,769 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -45.28 |
Consensus MFE | -37.62 |
Energy contribution | -38.25 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.83 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 383649 120 + 22407834 GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU ((..(((....((((((((((.((((.((((((..(((......))))))))).).)))..)))))))))).(((((......)))))(....))))..))................... ( -44.00) >DroSec_CAF1 51281 119 + 1 GGAAGAGAUCAGCUGGCGGACAGG-CCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU ((..(((....((((((((((..(-((((((((..(((......)))))))))...)))..)))))))))).(((((......)))))(....))))..))................... ( -41.90) >DroSim_CAF1 51972 120 + 1 GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU ((..(((....((((((((((.((((.((((((..(((......))))))))).).)))..)))))))))).(((((......)))))(....))))..))................... ( -44.00) >DroYak_CAF1 52604 117 + 1 GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGCC---AUCGAUUUGCAUUGAGGCAAGUUCCUCGGCAGCUGCAACUGGGCAGCGGAAACCUCAGUCCGCAGAUGAAUCUCUAAAC ...((((((((.(((.(((((.((((..((((((.(((---...(((((((......)))))))....))).))))))...))))((.(....)))..)))))))).)).)))))).... ( -51.20) >consensus GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU ((..(((....((((((((((.(((.((((((.((((....))))...)))).)).)))..)))))))))).(((((......)))))(....))))..))................... (-37.62 = -38.25 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:41 2006