Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,322,531 – 3,322,628 |
Length | 97 |
Max. P | 0.890552 |
Location | 3,322,531 – 3,322,628 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.40 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -20.75 |
Energy contribution | -20.87 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.58 |
Structure conservation index | 0.83 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3322531 97 + 22407834 UAUGUCUUGACUUGGCAAACUGCCUUUAGGAAACUAUGUACAUUUGUGUACCAC-CACCCCAUUAUGUAAAGCCACCGUGUUAAGUUCAAUUAGACUA ...((((.(((((((((...((.((((((....)...(((((....)))))...-............))))).))...))))))))).....)))).. ( -21.10) >DroSec_CAF1 8725 97 + 1 AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCAC-CCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA ...((((.(((((((((...(((((((((...((((.......))))......)-)))............)))))...))))))))).....)))).. ( -26.10) >DroSim_CAF1 8848 98 + 1 AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCACCCCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA ...((((.(((((((((...((((((((((..((((.......))))......)))))............)))))...))))))))).....)))).. ( -27.90) >consensus AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCAC_CCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA ...((((.(((((((((...((((((.((....))....((......))....................))))))...))))))))).....)))).. (-20.75 = -20.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006