| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,320,677 – 3,320,770 |
| Length | 93 |
| Max. P | 0.635244 |
| Location | 3,320,677 – 3,320,770 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 85.39 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -15.12 |
| Energy contribution | -14.25 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3320677 93 - 22407834 UUUUAUUACGUACAGAGAGAGUAGAGCGCACAUCUAGUGGCCAACUAAU--ACUAAUAUUAGUAUGCAAUUUGUGCUGAAACUACUUCUUUCUCU .............(((((((((((..((((((.......((..((((((--(....)))))))..))....))))).)...)))).))))))).. ( -23.00) >DroSec_CAF1 6870 94 - 1 UU-UAUUACGUACAGAGAAAGUAGAGCGCACAUCUAGUGGCCAACUAACUAUCUAAUAUUAGUAUGCAAUUUAUGCUGAAACUACUUAUUUAUCU ..-...........(((.((((((.((.(((.....))))).................((((((((.....))))))))..)))))).))).... ( -15.60) >DroSim_CAF1 7003 90 - 1 UUUUAUUACGUACAGAGAAAGUAGAGCGCACAUCUAGUGGCCA-----CUAACUAAUAUUAGUAUGCAAUUUAUGCUGAAACUACUUAUUUCUCU .............(((((((((((.((.(((.....)))))..-----..........((((((((.....))))))))..)))))...)))))) ( -19.50) >DroYak_CAF1 6816 90 - 1 -UUUAUUAAGUACAGAGAAAGUAGAACGC--UUCAAGUGGCCAACUAAC--ACUAAAAUUGGUAUGUAAUUUAUGCUAGAAUUACUUAUUUCUCU -............(((((((((((.....--....((((.........)--)))....((((((((.....))))))))..)))))...)))))) ( -16.00) >consensus UUUUAUUACGUACAGAGAAAGUAGAGCGCACAUCUAGUGGCCAACUAAC__ACUAAUAUUAGUAUGCAAUUUAUGCUGAAACUACUUAUUUCUCU .............(((((((((((..(((.......)))...................((((((((.....))))))))..))))))...))))) (-15.12 = -14.25 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:53 2006