Locus 1256

Sequence ID 2L_DroMel_CAF1
Location 3,319,642 – 3,319,740
Length 98
Max. P 0.873435
window2053

overview

Window 3

Location 3,319,642 – 3,319,740
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 70.12
Mean single sequence MFE -18.66
Consensus MFE -10.37
Energy contribution -10.85
Covariance contribution 0.48
Combinations/Pair 1.41
Mean z-score -1.64
Structure conservation index 0.56
SVM decision value 0.88
SVM RNA-class probability 0.873435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3319642 98 - 22407834
UAAUUUUACAUAUUAUUCUUA-CCUGAAAUCCUAA-AGGACU-CACAUGUCUCACUUCAGAUCCAGCAGCGAGUCCAUCCACUUUGCUGCGCUCAAGGAUC
...............(((...-...)))(((((..-(((((.-.....)))..............(((((((((......)).))))))).))..))))). ( -19.20)
>DroVir_CAF1 29332 82 - 1
-----GCGC-----ACA-UUGAACAGCA---UUAA-AGAAUU-CUUUUAUCUUAU---AGCAACCUAAAUGAAGCCAGCCAUUAUGAUGUGCUUAAACAGC
-----..((-----(((-((.....((.---...(-(((...-......))))..---.))......((((........))))..)))))))......... ( -11.20)
>DroSec_CAF1 5821 98 - 1
UAAUUUCCCAUAUUAUUCUUA-CCUGAAAUCCUAA-AGGACU-CACAUGUCUCACUUCAGAUCCAGCAGCGAGUCCACUCAGUUUGCUGCGCUGAAGGAUC
...............(((...-...)))(((((..-.((((.-.....))))....((((...((((((((((....))).).))))))..))))))))). ( -22.70)
>DroSim_CAF1 5965 97 - 1
UAAUUUCAC-UAUUAUUCUUA-CCUGAAAUCCUAA-AGGACU-CACAUGUCUCACUUCAGAUCCUGCAGCGAGUCCACCCAGUUUGCUGCGCUGAACGAUC
..((((((.-...........-..)))))).....-.((((.-.....))))...(((((....(((((((((.(......)))))))))))))))..... ( -17.34)
>DroEre_CAF1 5670 98 - 1
--AGCUCGCACAUCAUUAUUA-CCUCACCUCUUAAAAGGACUCCACAUGUCCCACUCCAGAUCCUGCAGCGAUUCCACCUACUUCGCCGCGCUAAAGGAUC
--...................-...............((((.......)))).......((((((((.((((...........)))).)).....)))))) ( -17.70)
>DroYak_CAF1 5756 99 - 1
UUAAUUCACACAUCAUUCUUA-UGAGAGCUCCUAA-AGGACUCCACAUGUCCCACUCCAGAUCCUGCAGCGAGUCCACCCACUUCGCUGUUCUGAAGGAUC
............((((....)-)))....((((..-.((((.......)))).....((((....(((((((((......)).))))))))))).)))).. ( -23.80)
>consensus
UAAUUUCACAUAUUAUUCUUA_CCUGAAAUCCUAA_AGGACU_CACAUGUCUCACUUCAGAUCCUGCAGCGAGUCCACCCACUUUGCUGCGCUGAAGGAUC
.....................................((((.......)))).......(((((.((((((((.........))))))))......))))) (-10.37 = -10.85 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:52 2006