Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,313,955 – 3,314,061 |
Length | 106 |
Max. P | 0.533604 |
Location | 3,313,955 – 3,314,061 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -15.70 |
Energy contribution | -16.23 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.19 |
Mean z-score | -1.98 |
Structure conservation index | 0.47 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3313955 106 + 22407834 ---UAUGCUU--UUAGGCACUUCGUACAAUGUUCUUGUAAGCGCGGUGAACAACAGUCGUUGUCCGGAUGCGCCGUGCAGCGAGUACGGAAUCAAAGAAAAGAAUGCAUCU ---..((((.--...)))).(((((((..(((((((((....)))).)))))....((((((..(((.....)))..)))))))))))))..................... ( -30.90) >DroVir_CAF1 21195 97 + 1 ------CCCA--ACAGGCACCACAUACAAUGUGUUGGUGAGCGCUGUGAAUAGCACUCGCUGCCCGGAUGCGCCCUGCAGCGAGUACACCAUCAAACAGAAGC------CC ------....--...(((..(((((...))))).(((((...((((....))))(((((((((..((.....))..))))))))).)))))..........))------). ( -35.50) >DroPse_CAF1 24826 98 + 1 -----CUUUU--GCAGGCACUUCCUACAAUGUCCUUGUCAGUGCCGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAGGAGAAGC------CA -----.....--...(((.....(......)((((((...(((((((.......((.((((((..((.....))..)))))).)))))))))))))))...))------). ( -31.81) >DroWil_CAF1 111252 100 + 1 -----UUGUUGCACAGGCACUUCCUACAACGUGCUUGUCAGUGCUGUGAACAACACACGCUGUCCGGAUGCCCCGUGCAGCGAGUACGGCAUCAAAGAGAAGC------CA -----....((.((((((((..........))))))))))((((((((.....))).(((((..(((.....)))..))))))))))(((.((.....)).))------). ( -39.00) >DroAna_CAF1 162 103 + 1 UAUUUUACAU--UCAGGCACUUCAUACAAUGUCCUUGUGAGUGCUCUGAAUAACAGUCGGUGUCCGGAUGCGCCGUGCAGCGAAUAUGGCAUCAAACAGAAGC------CC ........((--((((((((((...((((.....)))))))))).)))))).....(((.((..(((.....)))..)).)))....(((.((.....)).))------). ( -31.80) >DroPer_CAF1 27004 98 + 1 -----CUUUU--GCAGGCACUUCCUACAAUGUCCUUGUCAGUGCCGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAGGAGAAGC------CA -----.....--...(((.....(......)((((((...(((((((.......((.((((((..((.....))..)))))).)))))))))))))))...))------). ( -31.81) >consensus _____UUCUU__ACAGGCACUUCCUACAAUGUCCUUGUCAGUGCUGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAAGAGAAGC______CA ...............((((((....((((.....)))).))))))(((.....))).((((((..((.....))..))))))............................. (-15.70 = -16.23 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006