Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,312,658 – 3,312,778 |
Length | 120 |
Max. P | 0.839752 |
Location | 3,312,658 – 3,312,778 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -30.86 |
Consensus MFE | -26.54 |
Energy contribution | -26.62 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.48 |
Structure conservation index | 0.86 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3312658 120 + 22407834 AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAGAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGCCGACUAUUUUAAGCAUUAUUCU .....(((((.(((.(((((((((.........))))))...((((.((((((((...((.....))((((.....)))))))))))).).)))..))).))).)))))........... ( -33.20) >DroSec_CAF1 21657 120 + 1 AUUGAUAAGGAAGUGGGUGCACGUGCUCCCUUAACGUCCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUAAGUGCCGUCGACUAUUUUCAGCAUUAUUCU ...(((..(((.(((((.((....)).)))...)).)))....((((....)))))))......(((((..((((..((..((((....))).)..))..))))....)))))....... ( -28.30) >DroSim_CAF1 21610 120 + 1 AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGUCGACUAUUUUCAGCAUUAUUCU .......(((((((((.(((((((.........)))))))...((((....)))).)))))))))((((..((((..((..((((....))).)..))..))))....))))........ ( -33.10) >DroEre_CAF1 29833 120 + 1 AUUGAUAAGAAAGUGGGUGCACGUGCUCCGUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUAUUUUGAGUGCAGUCGACUAUUUUGAGCACUAUUCU .........(((((((((((((((.........))))))....((((....)))).......((((((....))))))..))))))))).(((((..((((.....)))))))))..... ( -31.90) >DroYak_CAF1 21835 120 + 1 AUUGAUAAGACAGUGGGUGCACGUGCUCCGUUAACGUGCAAUCAUCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUCUUCUGAGUGCAGUCGACUACUUUAAGCAUUAUUCU ..........(((((..(((((((.........)))))))..)).)))((((((.....))))))(((...((((..((..((((....))).)..))..)))).....)))........ ( -27.80) >consensus AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGUCGACUAUUUUAAGCAUUAUUCU .......((((.(((..(((((((.........)))))))..)))..((((((((...((.....))((((.....))))))))))))..(((((...............))))).)))) (-26.54 = -26.62 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:50 2006