Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,310,572 – 3,310,692 |
Length | 120 |
Max. P | 0.767998 |
Location | 3,310,572 – 3,310,692 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.26 |
Mean single sequence MFE | -33.78 |
Consensus MFE | -23.80 |
Energy contribution | -25.76 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.15 |
Mean z-score | -2.07 |
Structure conservation index | 0.70 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3310572 120 - 22407834 ACCACAAAGCCCACCAUUAUGCCCGUGUUCAUGGUGAGCGUAAAAAAGGAGCACAGGCGACCUCGAAUGCUGGUGGGUUUUGUGAAAAAAAACUAUUAUCUGUCGAAAUUUAAUUUAGAU ..((((((((((((((.((((((.((((((....(........)....)))))).)))(....)..))).)))))))))))))).............(((((.............))))) ( -37.22) >DroSec_CAF1 19565 116 - 1 ACCACGAAGCCCACCAUUAUGCCCGUGUUCAUGGUAAGCGUAAAAAAGGAGCAUAGGCGACCGCGAAUGCUGGUGGGUUUUAUGAAAAA-AUCUA---UUUGUCAAAAUUCAAUUUAGAU ..((..(((((((((.((((((((((....))))...))))))......(((((..((....))..))))))))))))))..)).....-(((((---.(((........)))..))))) ( -36.80) >DroSim_CAF1 19469 119 - 1 ACCACGAAGCCCACCAUUAUGCCCGUGUUCAUGGUAAGCGUAAAAAAGGAGCAUAGGCGACCGCGAAUGCUGGUGGGUUUUGUGAAAAA-AUCUAUUAUUUGUCAAAAUUCAAUUUAGAU ..(((((((((((((.((((((((((....))))...))))))......(((((..((....))..)))))))))))))))))).....-(((((....(((........)))..))))) ( -41.10) >DroEre_CAF1 27712 119 - 1 ACUAUGAAGCCCACCAUUAUACCCGUGUUCAUGGUGAGCGUAAAAAAGGAGCACAGGCGACCGCGAAUGCUGACGAGUUAGGGGAAAAA-UUCUGUUAUUCGGCGAAACUCAAUUUUGGU ....(((.((.((((((.(((....)))..)))))).))((........((((...((....))...))))..(((((.(.((((....-)))).).))))))).....)))........ ( -24.40) >DroYak_CAF1 19753 119 - 1 ACCACGAAGCCCACCAUUAUUCCCGUGUUCAUGGUGAGCGUGAAAAAGGAGCACAGGCGACCGCGAAUGCUAGCGGGUUUUGAGAAAAA-AUCUAUUAUACGGCAAAAUCCAAUAAGGAA .((.((((((((..........((...((((((.....))))))...))((((...((....))...))))...))))))))(((....-.))).......)).....(((.....))). ( -29.40) >consensus ACCACGAAGCCCACCAUUAUGCCCGUGUUCAUGGUGAGCGUAAAAAAGGAGCACAGGCGACCGCGAAUGCUGGUGGGUUUUGUGAAAAA_AUCUAUUAUUUGUCAAAAUUCAAUUUAGAU ..((((((((((((((...((((.((((((....(........)....)))))).))))...((....)))))))))))))))).................................... (-23.80 = -25.76 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:47 2006