Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,308,924 – 3,309,016 |
Length | 92 |
Max. P | 0.532427 |
Location | 3,308,924 – 3,309,016 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 86.28 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -17.10 |
Energy contribution | -19.42 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.70 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3308924 92 + 22407834 ---AUCGUGAACUUGGGAUACAAACAGAAGGGCGAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG ---.((((((((((((.(((((..(((...((((......))))....((((.(....))))).))).))))).)))))).))))))........ ( -30.60) >DroSec_CAF1 17846 91 + 1 ---AUCGUGAACUUGGGAUACAAACAGAAGGGCAGACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAG-AUUACGGAGCAACAG ---.((((((.(((((.(((((..(((...(((........)))....((((.(....))))).))).))))).)))))-.))))))........ ( -28.00) >DroSim_CAF1 17738 92 + 1 ---AUCGUGAACUUGGGAUACAAACAGAAGGGCAAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG ---.((((((((((((.(((((..(((...(((........)))....((((.(....))))).))).))))).)))))).))))))........ ( -28.40) >DroEre_CAF1 26064 94 + 1 CAAAUUGUGAACUUCGGAUA-AAAGAGUGGGGCAAACAGACGCGAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG .....(((...(((((((((-......(((.(((..(((.(((...)))....(....).....)))...))).)))..)))).)))))..))). ( -20.40) >DroYak_CAF1 18041 82 + 1 AAAGUCGUAAAC-------------AGAGGAGCAAAUAGACGCCAGGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG ....((((((((-------------...((.(((..(((.(((...)))....(....).....)))...))).))..)).))))))........ ( -13.90) >consensus ___AUCGUGAACUUGGGAUACAAACAGAAGGGCAAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG ....((((((((((((.(((((........(((........))).((..(((.(....))))..))..))))).)))))).))))))........ (-17.10 = -19.42 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:46 2006