| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,305,050 – 3,305,154 |
| Length | 104 |
| Max. P | 0.512359 |
| Location | 3,305,050 – 3,305,154 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -21.75 |
| Energy contribution | -22.42 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3305050 104 - 22407834 -------------UUGGUGUCCCCCAA-AGGGGGCGUGGCAUG--GGGCAAUUACCUGGGUGAGAAAUCAUCGCCCCGUCUAGAUUGAUCGGAGUCAACUGGAAUAUCAAUUACGCAGUU -------------.....((((((...-.))))))(((...((--((((.........(((((....)))))))))))(((((.(((((....))))))))))..........))).... ( -37.20) >DroSec_CAF1 13905 103 - 1 -------------UUGGUGUCCCCA-A-ACGGGGCGUGGCAUG--GGGCAAUUACCUGGGUGAGAAAUCAACGCCCCAUCUAGAUUGAUCGGAGUCAACUAGAAUAUCAAUUACGCAGUU -------------........(((.-.-..)))((((((..((--((((....((....))((....))...))))))(((((.(((((....)))))))))).......)))))).... ( -34.00) >DroSim_CAF1 14098 103 - 1 -------------UUGGUGUCCCCC-A-AGGGGGCGUGGCAUG--GGGCAAUUACCUGGGUGAGAAAUCAACGCCCCAUCUAGAUUGAUCGGAGUCAACUGGAAUAUCAAUUACGCAGUU -------------.....((((((.-.-.))))))(((...((--((((....((....))((....))...))))))(((((.(((((....))))))))))..........))).... ( -35.70) >DroEre_CAF1 22238 103 - 1 -------------UUGGUGUCCCCA-AAAGGGGGCGUGGCAUG--CGGCAAUUACCUGGGUGAGAAAUCAUCGC-CCAUCUAGAUUGAUCGGAGUCAACUGGAAUAUCAAUUACGCAGUU -------------.....((((((.-...))))))..(((.((--((..((((...(((((((.......))))-)))(((((.(((((....)))))))))).....)))).))))))) ( -36.20) >DroYak_CAF1 14210 105 - 1 -------------UUGGUGUACCCA-A-AGGGGGCGUGGCAUGUGUGGCAAUUACCUGGGUGAGAAAUCAUCGCCCCAUCUAGAUUGAUCGGAGUCAACUGGAAUAUCAAUUACGCAGUU -------------...(((((....-.-..(((((((.((....)).)).........(((((....)))))))))).(((((.(((((....))))))))))........))))).... ( -35.30) >DroAna_CAF1 24149 108 - 1 GCUUAUACAUAGAUUCGCACCCGAAAA-AGGGGGCGUGUGCUG--AGCCAAUUACCUGGGUU---------GACCGCGGCUUGAUUGACCUGAGUCAACUGGGAAAUCAAUUGCGCAGUG (((((((((......(((.(((.....-.))).))))))).))--))).......(((((..---------..))((((.((((((..((..........))..)))))))))).))).. ( -30.70) >consensus _____________UUGGUGUCCCCA_A_AGGGGGCGUGGCAUG__GGGCAAUUACCUGGGUGAGAAAUCAUCGCCCCAUCUAGAUUGAUCGGAGUCAACUGGAAUAUCAAUUACGCAGUU ..................((((((.....))))))(((...................(((((.........)))))..(((((.(((((....))))))))))..........))).... (-21.75 = -22.42 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:41 2006