| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,304,487 – 3,304,585 |
| Length | 98 |
| Max. P | 0.998575 |
| Location | 3,304,487 – 3,304,585 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.81 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -8.32 |
| Energy contribution | -9.35 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.42 |
| SVM decision value | 3.15 |
| SVM RNA-class probability | 0.998575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3304487 98 + 22407834 ----------------------AAGUGUAAACAAAAAGUGGAAAUUGUUUGUGAAAUAGAUAUUAAUAAAAGCGUAAACGGACGAGCGGAAAUAUAAUUAUUUUGCAAAUAUCCCGCAUA ----------------------...............((((....((((((..((((((.(((.........(((......))).........))).))))))..))))))..))))... ( -19.57) >DroSec_CAF1 13349 97 + 1 -----------------------AGAGUAAACAAAAAGUGGAAAUUGUUUGUGAAAUAUAUAUGAAUAAAAGCGUAAACGGACGAGCGGAAAUAUAAUUAUUUUGCAAAUAUUCCGCAUA -----------------------..............((((((..((((((..((((((((((.........(((......))).......)))))..)))))..))))))))))))... ( -21.29) >DroSim_CAF1 13543 97 + 1 -----------------------AGAGUAAACAAAAAGUGGAAAUUGUUUGUGAAAUAUAUAUGAAUAAAAGCGUAAACGGACGAGCGGAAAUAUAAUUAUUUUGCAAAUAUCCCGCAUA -----------------------..............((((....((((((..((((((((((.........(((......))).......)))))..)))))..))))))..))))... ( -18.79) >DroEre_CAF1 21763 77 + 1 -----------------------AAAGUAAACAAAGUGUGGAAAUUGUUUGUGAAAUAU------AUA--------------UGAACGGAAAUAUAAUUAUUUUGCAAAUAUCCCGCAUA -----------------------............((((((....((((((..((((((------(((--------------(........)))))..)))))..))))))..)))))). ( -19.40) >DroYak_CAF1 13636 83 + 1 -----------------------AGAGUAAACAAAACGUGGAAGUUGUUUGUGGAAUAUACGUGUAUA--------------UGAACGGAAAUAUAAUUAUUUUGCAAAUAUCCCGCAUA -----------------------..............((((....((((((..(((((......((((--------------(........)))))..)))))..))))))..))))... ( -17.70) >DroAna_CAF1 23538 117 + 1 GAACCGAGAAGCGGUAUUCGAAAAGUGUAAACA--CGGUGAAAAUAACAUUCAGAAUUUAUCUGAAUGAAUGUGUAAAUGGAC-AACGGAAAUUUAAUUAAAUUGCGAACAAAACGAAUA ..((((.....))))(((((....((.((.(((--((((....))..((((((((.....))))))))..)))))...)).))-..((..(((((....))))).)).......))))). ( -23.40) >consensus _______________________AGAGUAAACAAAAAGUGGAAAUUGUUUGUGAAAUAUAUAUGAAUAAAAGCGUAAACGGACGAACGGAAAUAUAAUUAUUUUGCAAAUAUCCCGCAUA .....................................((((....(((((((((((((........................................)))))))))))))..))))... ( -8.32 = -9.35 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:40 2006