Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,289,063 – 3,289,165 |
Length | 102 |
Max. P | 0.624530 |
Location | 3,289,063 – 3,289,165 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -20.97 |
Consensus MFE | -18.88 |
Energy contribution | -19.12 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.90 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3289063 102 + 22407834 AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG-------- ....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20) >DroSec_CAF1 13044 102 + 1 AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG-------- ....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20) >DroSim_CAF1 13436 102 + 1 AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG-------- ....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20) >DroYak_CAF1 13141 107 + 1 AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUG---GCCAUAAUGUUUGCAUGCCAGAAACGCAG ....................(((((.(......((((((..(((((.....)))))...(.(((((........))))---)))))))).....).)))))......... ( -20.30) >consensus AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG________ ....................(((((.(......((((((..(((((.....))))).....(((((........)))))....)))))).....).)))))......... (-18.88 = -19.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:32 2006