Locus 1241

Sequence ID 2L_DroMel_CAF1
Location 3,288,799 – 3,288,892
Length 93
Max. P 0.998712
window2032

overview

Window 2

Location 3,288,799 – 3,288,892
Length 93
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 85.92
Mean single sequence MFE -14.38
Consensus MFE -13.90
Energy contribution -13.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.03
Structure conservation index 0.97
SVM decision value 3.20
SVM RNA-class probability 0.998712
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3288799 93 - 22407834
UUGA-AAAUGUCUGAAAUUUAAGCAGAACAAACAAAGCCGGAAACAAAGGAAAACCAAAGAAACUAAGACAAUAAAAUUGAAAUUGUUUUGCAA
....-.................(((((((((........(....)...((....))...........................))))))))).. ( -13.90)
>DroSec_CAF1 12803 71 - 1
UUGA-AAAUGUCUGAAAUUUAAGCAGAACAAACAAAGCCGGAAACAAAGGAAAACCA----------------------GAAAUUGUUUUGCAA
....-.................(((((((((........(....)...((....)).----------------------....))))))))).. ( -13.90)
>DroSim_CAF1 13172 93 - 1
UUGA-AAAUGUCUGAAAUUUAAGCAGAACAAACAAAGCCGGAAACAAAGGAAAACCAAAGAAACUAAGACAAUAAAAUUGAAAUUGUUUUGCAA
....-.................(((((((((........(....)...((....))...........................))))))))).. ( -13.90)
>DroYak_CAF1 12871 94 - 1
UUAAAAAAUGUCUGAAAUUUAAGCAGAACAAACAAAGGCGGAAACAAAGGAAAACCAACGAAAGUAAGACAAUAAAAUUGAAAUUGUUUUGCAA
......................(((((((((........(....)...((....)).((....))..................))))))))).. ( -15.80)
>consensus
UUGA_AAAUGUCUGAAAUUUAAGCAGAACAAACAAAGCCGGAAACAAAGGAAAACCAAAGAAACUAAGACAAUAAAAUUGAAAUUGUUUUGCAA
......................(((((((((........(....)...((....))...........................))))))))).. (-13.90 = -13.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:31 2006