Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 382,032 – 382,147 |
Length | 115 |
Max. P | 0.583814 |
Location | 382,032 – 382,147 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -40.40 |
Consensus MFE | -31.57 |
Energy contribution | -31.57 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 382032 115 + 22407834 ACUGAGAUUUGGAAUGGGACUUGGUCUGCCUUUG-----ACUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC .((((.((((((....((((...)))).))..((-----((....(((((((((((((((..(((((.......).))))..)))))))).)))).)))......)))))))).)))).. ( -39.30) >DroSec_CAF1 49686 98 + 1 --------------UGGGACUUGGUCUGCC---G-----AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGAAGUUGUGUCAAAAUGUUAGCC --------------..((((((((....))---)-----)))))((((((((((((((((..(((((.......).))))..)))))))).))))).........)))............ ( -36.50) >DroSim_CAF1 50356 112 + 1 ACUGAGAUUCGGAAUGGGACUUGGUCUGCC---G-----AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC .((((.(((..((...((((((((....))---)-----))))).(((((((((((((((..(((((.......).))))..)))))))).)))).))).......))..))).)))).. ( -42.70) >DroYak_CAF1 50925 117 + 1 ACUGCGAUUCGGAAUGGGACUUGGUCGGCU---GGCCAAGGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCUGGGCCUAAGAGGGCCAAGACGCCGAGCGGUUGUGUCAAAAUGUUAGCC (((((...(((((......(((((((....---))))))).))))).(((((((((((((..(((((.......).))))..)))))))).))))).))))).................. ( -43.10) >consensus ACUGAGAUUCGGAAUGGGACUUGGUCUGCC___G_____AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC ..............(((.((..((((..................))))((((((((((((..(((((.......).))))..)))))))).))))........)).)))........... (-31.57 = -31.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:35 2006