Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,287,850 – 3,287,953 |
Length | 103 |
Max. P | 0.974547 |
Location | 3,287,850 – 3,287,953 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -21.40 |
Energy contribution | -21.90 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 0.93 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3287850 103 + 22407834 GCCGGUCGUUGAACAUAAAUCUUUGAUUAUU-AUGGUUCGACAAAUGCUUCGUGUCAAUUCACUGAAGCAGACCCAAAUCAAUUAAAUAUCCAUUAUGUAAAUU ...((((((((((((((((((...)))..))-)).)))))))...(((((((((......))).)))))))))).............................. ( -24.80) >DroSec_CAF1 11872 104 + 1 GCCGGUCGUUAAACAUAAAUCUUUGAUUAUUUUUGGUUCGACAAAUGCUUCGUGUCAAUUCACAGAAGCAGACCCAAAUCAAUUAAAUAUCCAUUAUGCAAAUU ...((((((..(((..((((........))))...)))..))...(((((((((......))).)))))))))).............................. ( -20.70) >DroSim_CAF1 12238 103 + 1 GCCAGUCGUUGAACAUAAAUCUUUGAUUAUU-UUGGUUCGACAAAUGCUUCGUGUCAAUUCACUGAAGCAGACCCAAAUCAAUUAAAUAUCCAUUAUGCAAAUU ....((((((((((.((((...........)-))))))))))...(((((((((......))).)))))))))............................... ( -21.40) >DroYak_CAF1 11943 103 + 1 GUCGGUCGUUGAACAUGAAUCUUUGAUUAUU-UUGGUUCGACAAAUGCUUCGUGUCAAUUCACUGAAGCAGACCCAAAUCAAUUAAAUAUCCAUUAUGCAAACC ...(((((((((((...((((...))))...-...)))))))...(((((((((......))).)))))))))).............................. ( -25.50) >consensus GCCGGUCGUUGAACAUAAAUCUUUGAUUAUU_UUGGUUCGACAAAUGCUUCGUGUCAAUUCACUGAAGCAGACCCAAAUCAAUUAAAUAUCCAUUAUGCAAAUU ...(((((((((((...((((...)))).......)))))))...(((((((((......))).)))))))))).............................. (-21.40 = -21.90 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:28 2006