Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,287,477 – 3,287,569 |
Length | 92 |
Max. P | 0.999584 |
Location | 3,287,477 – 3,287,569 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.13 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -23.22 |
Energy contribution | -22.86 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -2.19 |
Structure conservation index | 0.94 |
SVM decision value | 3.75 |
SVM RNA-class probability | 0.999584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3287477 92 - 22407834 CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG ..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60) >DroSec_CAF1 11502 92 - 1 CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG ..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60) >DroSim_CAF1 11886 92 - 1 CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG ..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60) >DroYak_CAF1 11544 92 - 1 CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCCCCUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG ..............((((((((((((.((((.....))))))))))))...))))...(((.(((((((....))))..))))))....... ( -28.00) >DroAna_CAF1 25657 91 - 1 CUUUCUCUAAAAAGGGCAAAAAGGCCAUAA-ACCUCUUUAUGCCCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGACUCAUA .......(((((.(((((.(((((......-...))))).))))).)))))..(((((....(.(((((....)))))).)))))....... ( -25.00) >consensus CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG .......(((((.(((((((.((((......)))).))..))))).)))))..(((((....(.(((((....)))))).)))))....... (-23.22 = -22.86 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:27 2006