Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,282,686 – 3,282,801 |
Length | 115 |
Max. P | 0.653351 |
Location | 3,282,686 – 3,282,801 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -23.01 |
Energy contribution | -24.07 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.79 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3282686 115 - 22407834 CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGAGAGCCAAAUGUGGGGAAAAUG .............((((..............(((((((((((...((.....))..))).))))))))((((((....(((((....)))))..))))))..))))......... ( -31.70) >DroSec_CAF1 6725 115 - 1 CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAAUGUGGGGAAGGUG ((...........(((.....((((....))))(((((((((...((.....))..))).)))))).))).((..((.(((((....)))))(....)....))..))...)).. ( -28.40) >DroSim_CAF1 6509 115 - 1 CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAACGUGGGGAAGGUG .............((((...((((((.....(((((((((((...((.....))..))).)))))))).))))))(..(((((....)))))..).......))))......... ( -30.20) >DroYak_CAF1 6800 113 - 1 CCAGAUUAAAUUACACGAAAUAGGCUUAUGUCUGCGCAAAAUGAAAGGUAAACUCAAUUCUCUGGCAAUGGCUUGCAA-UUUGGCAACAAAUGGGAGUCGAUUGUGGGG-AGAUG ....................(((((....)))))......................(((..((.((((((((((.((.-((((....)))))).))))).))))).)).-.))). ( -26.20) >consensus CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAAUGUGGGGAAGAUG .............((((...((((((.....(((((((((((...((.....))..))).)))))))).))))))(..(((((....)))))..).......))))......... (-23.01 = -24.07 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:26 2006