Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,273,500 – 3,273,620 |
Length | 120 |
Max. P | 0.633487 |
Location | 3,273,500 – 3,273,620 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -26.21 |
Consensus MFE | -22.06 |
Energy contribution | -21.82 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.34 |
Structure conservation index | 0.84 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3273500 120 + 22407834 GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUGCGCAAGUUUUCAUCAGCUUUUAGCUGGCAAGCUGCAACUUUA .......(((((((((((((((((......((((....((....)).))))......)))))......(((((....))))).........((((.....)))))).))))))))))... ( -29.40) >DroSec_CAF1 100394 117 + 1 GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGUCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUUCACUGCGUAUAUG--CAAGUUUUCAUCAGCUUUUAGCUGGCAAG-UGUACCUUUA (((((.((..((((((...(((((........(((....))).(((........))))))))....))))))....))--.)))))....(((((.....)))))....-.......... ( -20.30) >DroSim_CAF1 103775 118 + 1 GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUG--CAAGUUUUCAUCAGCUUUUAGCUGGCGAGCUGCAACUUUA .......((((((((((((..........(((((.....(....)(((((.....((......))...)))))....)--)))).......((((.....)))))).))))))))))... ( -26.30) >DroEre_CAF1 98473 120 + 1 GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUCCGUGUAUCCGCAAGUUUCCAUCAGCUUUCAGCUGGCAAGCUGCAACUUUG .......((((((((((((..........(((((.(((((........)))))..((((.((.........)).)))).))))).......((((.....)))))).))))))))))... ( -27.20) >DroYak_CAF1 97007 120 + 1 GGCUUUUGGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUUCGUAUAUCCGCAAGAUUUCAUCAGCUUUCAGCUGGCAAGCUGCAACUUUA .......((((((((..............(((((((.((((....(((.(((((((...(((.............)))..))))))).)))......)))).)))))))))))))))... ( -27.85) >consensus GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUGCGCAAGUUUUCAUCAGCUUUUAGCUGGCAAGCUGCAACUUUA .......(((((((((((((((((......((((....((....)).))))......))))).............................((((.....)))))))).))))))))... (-22.06 = -21.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006