Locus 1234

Sequence ID 2L_DroMel_CAF1
Location 3,273,361 – 3,273,458
Length 97
Max. P 0.848643
window2024

overview

Window 4

Location 3,273,361 – 3,273,458
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -25.18
Consensus MFE -22.64
Energy contribution -21.76
Covariance contribution -0.88
Combinations/Pair 1.14
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.78
SVM RNA-class probability 0.848643
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3273361 97 + 22407834
AAGAAAAAUGCUCUCGAUCUACGUGAUGCUCGUUCCUCUUAGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCUAUUUACUGGCUGGCUUUCUG
.(((((...((((((.(((...((((.((..(.......)..)).))))..))).)))((((((((((......)))))))))))))....))))). ( -23.90)
>DroSec_CAF1 100255 97 + 1
AAGAAAAAUGCUCUCGAUCUACGUGAUGCUCGUUCCUCUUAGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCUAUUUACUGGCUGCGUUUCUG
.(((((...((((((.(((...((((.((..(.......)..)).))))..))).)))((((((((((......)))))))))))))....))))). ( -25.00)
>DroSim_CAF1 103636 97 + 1
AAGAAAAAUGCUCUCGAUCUACGUGAUGCUCGUUCCUCUUAGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCUAUUUACUGGCUGGGUUUCUG
.(((((...((((((.(((...((((.((..(.......)..)).))))..))).)))((((((((((......)))))))))))))....))))). ( -25.00)
>DroEre_CAF1 98339 93 + 1
AGGAAAAAUGCUCUUGAUCUACGUGAUGCUCGUCCCUCUUCGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCCAUUUACUG----GGUUUUUG
...((((((.(((((.(((...((((.((.((........)))).))))..))).))))(((((((((......))))))))).)----.)))))). ( -25.20)
>DroYak_CAF1 96872 93 + 1
AGGAAAAAUGCUCUCGAUCUACGUGAUGCUCGUCCCUCUUCGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCCAUUUACUG----GGUUUUUG
...((((((.(((((.(((...((((.((.((........)))).))))..))).))))(((((((((......))))))))).)----.)))))). ( -26.80)
>consensus
AAGAAAAAUGCUCUCGAUCUACGUGAUGCUCGUUCCUCUUAGGUUUCAUUUGAUGGGGAGUGAAUGGGUUUAUUUCUAUUUACUGGCUGGGUUUCUG
.(((((...((((((.(((...((((.(((...........))).))))..))).))))))(((((((......)))))))..........))))). (-22.64 = -21.76 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:23 2006