Locus 1233

Sequence ID 2L_DroMel_CAF1
Location 3,273,144 – 3,273,247
Length 103
Max. P 0.693974
window2023

overview

Window 3

Location 3,273,144 – 3,273,247
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.19
Mean single sequence MFE -17.12
Consensus MFE -12.62
Energy contribution -12.66
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.693974
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3273144 103 + 22407834
UUCGACGCCCUUUAAGAUCCAAA-----------------CCAACCCCAUGACACCACAAACCGUCACCAACUGUUGACAUCCUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
...((((........(.......-----------------.)........(((..(((((...((((.(....).)))).....((((....))))....)))))..)))....)))).. ( -14.70)
>DroSec_CAF1 100038 103 + 1
UUCGACGCCCUUUAAGCUCCAAA-----------------CCAACCCCAUAACACCACAACCCGUCACCAACUGUUGACAUCCUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
..((((((...((((........-----------------.......................((((.(....).)))).....((((....))))))))..))))))............ ( -13.80)
>DroSim_CAF1 103419 103 + 1
UUCGACGCCCUUUAAGCUCCAAA-----------------CCAACCCCAUGACACCACAACCCGUCACCAACUGUUGACAUCCUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
...(((((.......))......-----------------..........(((..(((((...((((.(....).)))).....((((....))))....)))))..))).....))).. ( -16.60)
>DroEre_CAF1 98108 117 + 1
UUCGCUGCCCUUUAAGCUGCAACCCCAAAACCC---AAACCCAAACCCAUGACACCACAACCCGUCAGCAACUGUUGACAUCUUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
...((.((.......)).)).............---..............(((..(((((...((((((....)))))).....((((....))))....)))))..))).......... ( -21.10)
>DroYak_CAF1 96634 119 + 1
UUCAAUGCUCUUUAAGCUCCAACCC-AAAACCUGAAAAACCCAACCACAUGACACCACAGCCCGUCAGCAACUGUUGACAUCCUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
......(((.....)))........-....................(((((((..(((((...((((((....)))))).....((((....))))....)))))..)))...))))... ( -19.40)
>consensus
UUCGACGCCCUUUAAGCUCCAAA_________________CCAACCCCAUGACACCACAACCCGUCACCAACUGUUGACAUCCUCCUUUAAAAAGGUUAAUUGUGUCGUCCUAAUGUCUU
..................................................(((..(((((...((((.(....).)))).....((((....))))....)))))..))).......... (-12.62 = -12.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:22 2006