Locus 1232

Sequence ID 2L_DroMel_CAF1
Location 3,272,256 – 3,272,376
Length 120
Max. P 0.961919
window2022

overview

Window 2

Location 3,272,256 – 3,272,376
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -32.19
Consensus MFE -29.96
Energy contribution -29.96
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.93
SVM decision value 1.53
SVM RNA-class probability 0.961919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3272256 120 - 22407834
ACAAUAUUCAAUUGCGAUGCAAGAAAUGCGCAAAGCUGUCAAUCAUUGUCACGGUUUUUUAUUUCUGUGGCGUAACACAUGGCGUAUGAAUGAUUGGCGAAGUAGGUAAACUAUGGAUAU
...((((((....((..(((.(....)..)))..))((((((((((((((((((..........)))))))......((((...)))))))))))))))..((((.....)))))))))) ( -30.60)
>DroSec_CAF1 99140 120 - 1
AAAAUAUUCAAUUGCGAUGCAAGAAAUGCGCAAAGCUGUCAAUCAUUGUCACGGUUUUUUAUUUCUGUGCCGUAACACAUGGCGUAUGAAUGAUUGGCGGAGUAGGUAAACUAUGGAUAU
...((((((..(((((((.......)).)))))..((((((((((((...((((..........))))(((((.....))))).....)))))))))))).((((.....)))))))))) ( -32.00)
>DroSim_CAF1 102547 120 - 1
ACAAUAUUCAAUUGCGAUGCAAGAAAUGCGCAGAGCUGUCAAUCAUUGUCACGGUUUUUUAUUUCUGUGCCGUAACACAUGGCGUAUGAAUGAUUGGCGGAGUAGGUGAACUAUGGAUAU
...((((((..(((((((.......)).)))))..((((((((((((...((((..........))))(((((.....))))).....)))))))))))).((((.....)))))))))) ( -31.70)
>DroEre_CAF1 97300 120 - 1
ACAAUAUUCAAUUGCGAUGCAAGAAAUGCGCAAAGCUGUCAAUCAUUGUCACGGCUUUUUAUUUCCGUGCCGUAACACAUGGCGUAUGAAUGAUUGGCGGAGUAGGUAAACUAUGGAUAU
...((((((..(((((((.......)).)))))..((((((((((((((.(((((.............))))).)).((((...)))))))))))))))).((((.....)))))))))) ( -33.22)
>DroYak_CAF1 95772 120 - 1
ACCAUAUUCAAUUGCGAUGCAAGAAAUGCGCAAAGCUGUCAAUCAUUGUCACGGCUUUUUAUUUCUGUGCCGUAACACAUGGCGUAUGAAUGAUUGGCGGAGUAGGUAAACUAUGGAUAU
.(((((.....(((((.((((.....)))))....((((((((((((((.(((((.............))))).)).((((...)))))))))))))))).))))......))))).... ( -33.42)
>consensus
ACAAUAUUCAAUUGCGAUGCAAGAAAUGCGCAAAGCUGUCAAUCAUUGUCACGGUUUUUUAUUUCUGUGCCGUAACACAUGGCGUAUGAAUGAUUGGCGGAGUAGGUAAACUAUGGAUAU
...((((((..(((((((.......)).)))))..((((((((((((((.(((((.............))))).)).((((...)))))))))))))))).((((.....)))))))))) (-29.96 = -29.96 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:21 2006