Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 381,813 – 381,933 |
Length | 120 |
Max. P | 0.714799 |
Location | 381,813 – 381,933 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -24.49 |
Energy contribution | -25.68 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.15 |
Mean z-score | -2.06 |
Structure conservation index | 0.73 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 381813 120 - 22407834 AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGCCACUGGAAAAAAAGUUGCGCCCUAUUGGAGCUAUUUCACUCGUAGCUAAUAAACUUAUCCU .....((((.(((((.((((.(((((((((((((....)))))).)))))))))))..((...)).......)))))..((....))((((((.......))))))......)))).... ( -34.20) >DroSec_CAF1 49494 116 - 1 AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGACACUGGGAAAAAAGUUGAGGCCUAUUGGGGCUACUUCAC-CGUAGCUA---AACUUAUCCU ................((((.(((((((((((((....)))))).))))))))))).......((((...(((((....((....))((((((.....-.)))))).---))))).)))) ( -34.40) >DroSim_CAF1 50138 119 - 1 AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACACUCAUAAAGACACUGGGAAAAAAGUUGCGGCCUAUUGGGGCUACUUCAC-CGUAGCUAAUAAACUUAUCCU .....((((.....(...((((((((((((((((....)))))).))).((((.........))))...........)))))))..)((((((.....-.))))))......)))).... ( -32.00) >DroYak_CAF1 50688 117 - 1 AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCGCCGUCAUAAAGUCACUGGAAAAAAAGUCGUGGCUUAAUGAGGC---UUCACUCGUAGCUAAUAAAUGUAUCCU (((((((..(((.((...((((((((((((((((....)))))).)))..((((.(((((((.((........))))))))).)))))))---)).))..)).)))..)))))))..... ( -34.50) >consensus AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGACACUGGAAAAAAAGUUGCGGCCUAUUGGGGCUACUUCAC_CGUAGCUAAUAAACUUAUCCU .....((((.(((((.((((.(((((((((((((....)))))).)))))))))))...(....).......)))))..........((((((.......))))))......)))).... (-24.49 = -25.68 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:34 2006