Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,266,067 – 3,266,166 |
Length | 99 |
Max. P | 0.994265 |
Location | 3,266,067 – 3,266,166 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 76.80 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -16.25 |
Energy contribution | -16.75 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.69 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3266067 99 + 22407834 AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACGCACAUAUAUGUAAGCCGACAUAUAGCCAAGUGUAUAUGUGUAUAUAUGU .((((((....((..((....))..))...)))))).(((((((((((..(((.(((((((......))))))).....)))..)).))).)))))).. ( -26.50) >DroSec_CAF1 92715 77 + 1 AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACUCACAUAUAUG----------------------UAUAUAUGUAUAUAUGG .((((((....((..((....))..))...)))))).(((((........)))))(((((----------------------(((....)))))))).. ( -19.10) >DroEre_CAF1 89443 92 + 1 AUCAGCGCCUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCGCUUCGCACAUAUAAA-----CUACAUAUAUCUGAG--UAUAUAUACAUAUAUGG .(((((((...((..((....))..))..))))))).((((((......)))))).....-----...(((((((....(--((....)))))))))). ( -22.90) >DroYak_CAF1 89113 82 + 1 AUCAGCGCCUAAGUGCACAAGUGUGUUGUGUGCUGAAAUGUGUCACUUCGCACAUAUAAA-----CUAUAUAUA----AG--UAUA------UGUAUGG .(((((((...((..((....))..))..))))))).((((((......)))))).....-----(((((((((----..--..))------))))))) ( -25.40) >consensus AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACGCACAUAUAAA_____CUACAUAUA____AG__UAUAUAUGUAUAUAUGG .(((((((...((..((....))..))..))))))).(((((........)))))............................................ (-16.25 = -16.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:15 2006