Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,264,339 – 3,264,446 |
Length | 107 |
Max. P | 0.634051 |
Location | 3,264,339 – 3,264,446 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -30.44 |
Consensus MFE | -22.86 |
Energy contribution | -23.70 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.22 |
Mean z-score | -1.67 |
Structure conservation index | 0.75 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3264339 107 - 22407834 GGAAAAGUCGAAAAGGUGGCUGCAAACUGAAGGCGAAAGUGCUUAAAUAAAGCUGUUUUUGUUGCGUUCGCU-UUGCGAGUAUCUCAGCCAUCUUUGGUAUUUUGGUU ...(((((...(((((((((((((((.((((.((((....((((.....))))........)))).)))).)-))))(((...)))))))))))))...))))).... ( -33.20) >DroSec_CAF1 90975 107 - 1 GGAAAAGUCGAAAAGGUGGCUACAAACUGGAGGCGAAAGUGCUUAAAUAAAGCUGUAUUUGUUGCGUUCGCU-UGGCGAGUAUUUGAGCCAUCUUUUGUAUUUUGGCU .....((((((((((((((((.((((((.(.((((((...((.((((((......))))))..)).))))))-...).)))..)))))))))))......)))))))) ( -32.10) >DroSim_CAF1 94058 104 - 1 GGAAAAGUCGGAAAGGUGGUUGCAAACUGGAGGCGAAAGUGCU-AAAUAAAGCUGU-UUUGUUGCGUUCGCU-UGGCGAGUAUUUGAGCCAUCU-UUGUGUUUUGGCU ((..(((.((.((((((((((.((((((.(.((((((...((.-(((((....)))-)).))....))))))-...).)))..)))))))))))-)).)).)))..)) ( -29.60) >DroEre_CAF1 87859 107 - 1 GGAAAAGUCGAAAAGGUGGCUGAAAACUGAAGGCAAAAGUGCUCAAAUAAAGCUGUUUUUGUUGCGUUCGCA-UUGCGAGUAUCUCAGCCAACUUUUGCUUUUUAGCU .(((((((..(((((.(((((((........(((((((..(((.......)))...)))))))...(((((.-..)))))....))))))).)))))))))))).... ( -29.50) >DroYak_CAF1 87352 108 - 1 GGAAAAGACGAAAAGGUGGCUCCGAACUGAAGGCAAAAGUGCUUAAAUAAAGCCGUUUUUGUUGCGCUCGCUUUUGCGAGUAUCUCUGUCAACUUUUGCUUUUUGGCA .((((((.(.(((((.((((...((......(((((((..((((.....))))...)))))))..((((((....)))))).))...)))).)))))))))))).... ( -27.80) >consensus GGAAAAGUCGAAAAGGUGGCUGCAAACUGAAGGCGAAAGUGCUUAAAUAAAGCUGUUUUUGUUGCGUUCGCU_UUGCGAGUAUCUCAGCCAUCUUUUGUAUUUUGGCU ...(((((..(((((((((((..........(((((((..((((.....))))...)))))))...(((((....)))))......)))))))))))..))))).... (-22.86 = -23.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:05 2006