Locus 1223

Sequence ID 2L_DroMel_CAF1
Location 3,262,712 – 3,262,831
Length 119
Max. P 0.931670
window2004

overview

Window 4

Location 3,262,712 – 3,262,831
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.24
Mean single sequence MFE -32.64
Consensus MFE -28.88
Energy contribution -29.16
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.88
SVM decision value 1.21
SVM RNA-class probability 0.931670
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3262712 119 + 22407834
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAACCGAUACGGAAAGCGGAAAGUUGCCUACUU-UUUAUGGCUCACUUUUAAGUCUGGUGCGGAUGAAUAUAUGUGUGUGCAU
...((((..(((((((((((....))))))..........(((...((((.....((((((.(((.....-.....)))..))))))...))))...))).....))))).))))..... ( -32.30)
>DroSec_CAF1 89315 115 + 1
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAUCCGAUACGGAAAGCGAAAAGUUGCCUACUU-UUUAUGGCUCAAUUUUAAGUCUGGUUCGGAUGAAUAUAUG----UGCAU
...((((..(((((((((((....))))))).......((((((..((((.....((((...(((.....-.....)))....))))...))))..))))))..)))).))----))... ( -31.60)
>DroSim_CAF1 92461 115 + 1
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAUCCGAUACGGAAAGCGGAAAGUUGCCUACUU-UUUAUGGCUCACUUUUAAGUCUGGUGCGGAUGAAUAUAUG----UGCAU
...((((..(((((((((((....))))))).......(((((...((((.....((((((.(((.....-.....)))..))))))...))))...)))))..)))).))----))... ( -34.00)
>DroEre_CAF1 86124 116 + 1
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAUGCGAUACGGAAAGCGGAAAGUUGCCUACUUUUUUAUGGCUCACUUUUAAGUCUGGUGCGGAUGAAUAUAUG----UGCAU
...((((..(((((((((((....)))))))........((((...((((.....((((((.(((...........)))..))))))...)))).)))).....)))).))----))... ( -29.50)
>DroYak_CAF1 85590 115 + 1
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAUCCGAUACGGAAAGCGGAAAGUUGCCUACUU-UUUAUGGCUCACUUUCAAGUCUGGUGCGGAUGAAUAUAUG----UGCAU
...((((..(((((((((((....))))))).......(((((...((((.....((((((.(((.....-.....)))..))))))...))))...)))))..)))).))----))... ( -35.80)
>consensus
UUUCACAGAAUAUGGCCAGCAACAGUUGGCUUUAAUGGAUCCGAUACGGAAAGCGGAAAGUUGCCUACUU_UUUAUGGCUCACUUUUAAGUCUGGUGCGGAUGAAUAUAUG____UGCAU
.(((.((......(((((((....)))))))....)).(((((...((((.....((((((.(((...........)))..))))))...))))...))))))))............... (-28.88 = -29.16 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:04 2006