Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 381,237 – 381,340 |
Length | 103 |
Max. P | 0.609947 |
Location | 381,237 – 381,340 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -26.32 |
Energy contribution | -26.38 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.65 |
Structure conservation index | 0.76 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 381237 103 + 22407834 CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU ...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30) >DroSec_CAF1 48912 103 + 1 CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU ...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30) >DroSim_CAF1 49561 103 + 1 CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU ...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30) >DroYak_CAF1 50072 120 + 1 CCCAUAAAUAAGCAGUCCAGAUACUGGCCAGACUGGGCACUGGGCACUGGCUGGAAACUGGAGUCCGAUCAAGUCUGAUCAAUAAAGUCUGGAGAGUGGAGGAGCGAGACGGAGGAGCAU .((........((..(((...((((..(((((((((((.((.(((....)))(....).)).))))(((((....))))).....)))))))..))))..)))))........))..... ( -36.29) >consensus CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG_______GACUGGCUGGAAACUGGAG__________UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU ...........((...((((...((((((((...............))))))))...)))).........................((((.((..........)).))))......)).. (-26.32 = -26.38 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:33 2006